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Old 10-09-2005, 11:33 AM
zcook zcook is offline
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Default Post install : Zimbra start up is taking upwards of 10 minutes
On the system's first boot zimbra takes a solid 10 minutes to start up. Once the system is booted, stopping and starting the service takes closer to 1 minute.

Server response with AJAX forms and general page refreshes are also extremely slow. Much slower than the nifty online demo and so I'm lead to believe that my install is goofed. I'm testing this out at home before I propose it to my office so it could have to do that this machine is also DNS and running x-windows.

I'm running Cent OS 4.1, a RHEL clone.
Fresh off of boot, here's what /var/log/zimbra.log has to say.

Code:
Oct  9 13:01:13 mail postfix/smtpd[4521]: connect from localhost.localdomain[127.0.0.1]
Oct  9 13:01:13 mail postfix/smtpd[4521]: disconnect from localhost.localdomain[127.0.0.1]
Oct  9 13:01:41 mail postfix/smtp[20624]: connect to gsmtp83.google.com[66.249.83.27]: Connection timed out (port 25)
Oct  9 13:01:49 mail postfix/smtpd[4521]: connect from localhost.localdomain[127.0.0.1]
Oct  9 13:01:49 mail postfix/smtpd[4521]: disconnect from localhost.localdomain[127.0.0.1]
Oct  9 13:03:23 mail zimbramon[2564]: 2564:info: Starting services 
Oct  9 13:03:24 mail zimbramon[2564]: 2564:info: STARTING ldap 
Oct  9 13:03:24 mail zimbramon[2564]: 2564:info: start service ldap 
Oct  9 13:03:24 mail zimbramon[2564]: 2564:info: start app ldap 
Oct  9 13:03:24 mail zimbramon[2564]: 2564:info: Starting child ldap: (20051009130324) 
Oct  9 13:03:32 mail zimbramon[2564]: 2564:info: STARTING services 
Oct  9 13:03:32 mail zimbramon[2564]: 2564:info: STARTING snmp 
Oct  9 13:03:32 mail zimbramon[2564]: 2564:info: start service snmp 
Oct  9 13:03:32 mail zimbramon[2564]: 2564:info: start app swatch 
Oct  9 13:03:32 mail zimbramon[2564]: 2564:info: Starting child swatch: (20051009130332) 
Oct  9 13:06:53 mail zimbramon[2564]: 2564:info: STARTING antivirus 
Oct  9 13:06:53 mail zimbramon[2564]: 2564:info: start service antivirus 
Oct  9 13:06:53 mail zimbramon[2564]: 2564:info: start app amavisd 
Oct  9 13:06:53 mail zimbramon[2564]: 2564:info: Starting child amavisd: (20051009130653) 
Oct  9 13:07:02 mail amavis[3678]: starting.  /opt/zimbra/amavisd/sbin/amavisd at mail.domain.com amavisd-new-2.3.1 (20050509), Unicode aware, LANG=en_US.UTF-8
Oct  9 13:07:02 mail amavis[3678]: user=501, EUID: 501 (501);  group=, EGID: 501 502 501 5 (501 502 501 5)
Oct  9 13:07:02 mail amavis[3678]: Perl version               5.008005
Oct  9 13:07:03 mail amavis[3678]: INFO: no optional modules: Sys::Hostname::Long Mail::SPF::Query Razor2::Client::Agent Net::CIDR::Lite
Oct  9 13:07:03 mail amavis[3729]: Net::Server: Process Backgrounded
Oct  9 13:07:03 mail amavis[3729]: Net::Server: 2005/10/09-13:07:03 Amavis (type Net::Server::PreForkSimple) starting! pid(3729)
Oct  9 13:07:03 mail amavis[3729]: Net::Server: Binding to TCP port 10024 on host 127.0.0.1
Oct  9 13:07:03 mail amavis[3729]: Net::Server: Group Not Defined.  Defaulting to EGID '501 502 501 5'
Oct  9 13:07:03 mail amavis[3729]: Net::Server: User Not Defined.  Defaulting to EUID '501'
Oct  9 13:07:03 mail amavis[3729]: Module Amavis::Conf        2.038
Oct  9 13:07:03 mail amavis[3729]: Module Archive::Tar        1.24
Oct  9 13:07:03 mail amavis[3729]: Module Archive::Zip        1.14
Oct  9 13:07:03 mail amavis[3729]: Module BerkeleyDB          0.26
Oct  9 13:07:03 mail amavis[3729]: Module Compress::Zlib      1.34
Oct  9 13:07:03 mail amavis[3729]: Module Convert::TNEF       0.17
Oct  9 13:07:03 mail amavis[3729]: Module Convert::UUlib      1.051
Oct  9 13:07:03 mail amavis[3729]: Module DBD::mysql          2.9005_3
Oct  9 13:07:03 mail amavis[3729]: Module DBI                 1.47
Oct  9 13:07:03 mail amavis[3729]: Module DB_File             1.809
Oct  9 13:07:03 mail amavis[3729]: Module MIME::Entity        5.404 
Oct  9 13:07:03 mail amavis[3729]: Module MIME::Parser        5.406 
Oct  9 13:07:03 mail amavis[3729]: Module MIME::Tools         5.411 
Oct  9 13:07:03 mail amavis[3729]: Module Mail::Header        1.62
Oct  9 13:07:03 mail amavis[3729]: Module Mail::Internet      1.62
Oct  9 13:07:03 mail amavis[3729]: Module Mail::SpamAssassin  3.000004
Oct  9 13:07:03 mail amavis[3729]: Module Net::Cmd            2.26
Oct  9 13:07:03 mail amavis[3729]: Module Net::DNS            0.51
Oct  9 13:07:03 mail amavis[3729]: Module Net::LDAP           0.32
Oct  9 13:07:03 mail amavis[3729]: Module Net::SMTP           2.29
Oct  9 13:07:03 mail amavis[3729]: Module Net::Server         0.87
Oct  9 13:07:03 mail amavis[3729]: Module Time::HiRes         1.65
Oct  9 13:07:03 mail amavis[3729]: Module Unix::Syslog        0.99
Oct  9 13:07:03 mail amavis[3729]: Amavis::DB code    loaded
Oct  9 13:07:03 mail amavis[3729]: Amavis::Cache code loaded
Oct  9 13:07:03 mail amavis[3729]: SQL base code      NOT loaded
Oct  9 13:07:03 mail amavis[3729]: SQL::Log code      NOT loaded
Oct  9 13:07:03 mail amavis[3729]: SQL::Quarantine    NOT loaded
Oct  9 13:07:03 mail amavis[3729]: Lookup::SQL  code  NOT loaded
Oct  9 13:07:03 mail amavis[3729]: Lookup::LDAP code  loaded
Oct  9 13:07:03 mail amavis[3729]: AM.PDP prot  code  NOT loaded
Oct  9 13:07:03 mail amavis[3729]: SMTP-in prot code  loaded
Oct  9 13:07:03 mail amavis[3729]: ANTI-VIRUS code    loaded
Oct  9 13:07:03 mail amavis[3729]: ANTI-SPAM  code    loaded
Oct  9 13:07:03 mail amavis[3729]: Unpackers  code    loaded
Oct  9 13:07:03 mail amavis[3729]: Found $file            at /usr/bin/file
Oct  9 13:07:03 mail amavis[3729]: No $dspam,             not using it
Oct  9 13:07:03 mail amavis[3729]: Internal decoder for .mail
Oct  9 13:07:03 mail amavis[3729]: Internal decoder for .asc 
Oct  9 13:07:03 mail amavis[3729]: Internal decoder for .uue 
Oct  9 13:07:03 mail amavis[3729]: Internal decoder for .hqx 
Oct  9 13:07:03 mail amavis[3729]: Internal decoder for .ync 
Oct  9 13:07:03 mail amavis[3729]: No decoder for       .F    tried: unfreeze, freeze -d, melt, fcat
Oct  9 13:07:03 mail amavis[3729]: Found decoder for    .Z    at /usr/bin/gzip -d
Oct  9 13:07:03 mail amavis[3729]: Internal decoder for .gz  
Oct  9 13:07:03 mail amavis[3729]: Found decoder for    .gz   at /usr/bin/gzip -d (backup, not used)
Oct  9 13:07:03 mail amavis[3729]: Found decoder for    .bz2  at /usr/bin/bzip2 -d
Oct  9 13:07:03 mail amavis[3729]: No decoder for       .lzo  tried: lzop -d
Oct  9 13:07:03 mail amavis[3729]: Found decoder for    .rpm  at /usr/bin/rpm2cpio
Oct  9 13:07:03 mail amavis[3729]: Found decoder for    .cpio at /usr/bin/pax
Oct  9 13:07:03 mail amavis[3729]: Found decoder for    .tar  at /usr/bin/pax
Oct  9 13:07:03 mail amavis[3729]: Internal decoder for .tar  (backup, not used)
Oct  9 13:07:03 mail amavis[3729]: Found decoder for    .deb  at /usr/bin/ar
Oct  9 13:07:03 mail amavis[3729]: Internal decoder for .zip 
Oct  9 13:07:03 mail amavis[3729]: No decoder for       .rar  tried: rar, unrar
Oct  9 13:07:03 mail amavis[3729]: No decoder for       .arj  tried: arj, unarj
Oct  9 13:07:03 mail amavis[3729]: No decoder for       .arc  tried: nomarch, arc
Oct  9 13:07:03 mail amavis[3729]: No decoder for       .zoo  tried: zoo
Oct  9 13:07:03 mail amavis[3729]: Found decoder for    .lha  at /usr/bin/lha
Oct  9 13:07:03 mail amavis[3729]: No decoder for       .cab  tried: cabextract
Oct  9 13:07:03 mail amavis[3729]: No decoder for       .tnef tried: tnef
Oct  9 13:07:03 mail amavis[3729]: Internal decoder for .tnef
Oct  9 13:07:03 mail amavis[3729]: Found decoder for    .exe  at /usr/bin/lha
Oct  9 13:07:03 mail amavis[3729]: Using internal av scanner code for (primary) ClamAV-clamd
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: KasperskyLab AVP - aveclient
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: KasperskyLab AntiViral Toolkit Pro (AVP)
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: KasperskyLab AVPDaemonClient
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: CentralCommand Vexira (new) vascan
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: H+BEDV AntiVir or the (old) CentralCommand Vexira Antivirus
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: Command AntiVirus for Linux
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: Symantec CarrierScan via Symantec CommandLineScanner
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: Symantec AntiVirus Scan Engine
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: F-Secure Antivirus
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: CAI InoculateIT
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: CAI eTrust Antivirus
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: MkS_Vir for Linux (beta)
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: MkS_Vir daemon
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: ESET Software NOD32
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: ESET Software NOD32 - Client/Server Version
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: Norman Virus Control v5 / Linux
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: Panda Antivirus for Linux
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: NAI McAfee AntiVirus (uvscan)
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: VirusBuster
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: CyberSoft VFind
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: Ikarus AntiVirus for Linux
Oct  9 13:07:03 mail amavis[3729]: No primary av scanner: BitDefender
Oct  9 13:07:03 mail amavis[3729]: No secondary av scanner: ClamAV-clamscan
Oct  9 13:07:03 mail amavis[3729]: No secondary av scanner: FRISK F-Prot Antivirus
Oct  9 13:07:03 mail amavis[3729]: No secondary av scanner: Trend Micro FileScanner
Oct  9 13:07:03 mail amavis[3729]: No secondary av scanner: drweb - DrWeb Antivirus
Oct  9 13:07:03 mail amavis[3729]: No secondary av scanner: KasperskyLab kavscanner
Oct  9 13:07:03 mail amavis[3729]: Creating db in /opt/zimbra/amavisd/db/; BerkeleyDB 0.26, libdb 4.2
Oct  9 13:07:03 mail amavis[3729]: SpamControl: initializing Mail::SpamAssassin
Oct  9 13:07:04 mail amavis[3729]: SpamControl: done
Oct  9 13:07:04 mail amavis[3772]: TIMING [total 5 ms] - bdb-open: 5 (100%)100, rundown: 0 (0%)100
Oct  9 13:07:04 mail amavis[3773]: TIMING [total 4 ms] - bdb-open: 4 (100%)100, rundown: 0 (0%)100
Oct  9 13:07:04 mail amavis[3774]: TIMING [total 5 ms] - bdb-open: 5 (100%)100, rundown: 0 (0%)100
Oct  9 13:07:04 mail amavis[3778]: TIMING [total 4 ms] - bdb-open: 4 (100%)100, rundown: 0 (0%)100
Oct  9 13:07:04 mail amavis[3779]: TIMING [total 5 ms] - bdb-open: 5 (100%)100, rundown: 0 (0%)100
Oct  9 13:07:04 mail zimbramon[2564]: 2564:info: start app clamd 
Oct  9 13:07:04 mail zimbramon[2564]: 2564:info: Starting child clamd: (20051009130704) 
Oct  9 13:07:12 mail clamd[4328]: Daemon started. 
Oct  9 13:07:12 mail clamd[4328]: clamd daemon 0.85.1 (OS: linux-gnu, ARCH: i386, CPU: i686) 
Oct  9 13:07:12 mail clamd[4328]: Log file size limited to 20971520 bytes. 
Oct  9 13:07:12 mail clamd[4328]: Reading databases from /opt/zimbra/clamav/db 
Oct  9 13:07:13 mail clamd[4328]: Protecting against 40507 viruses. 
Oct  9 13:07:13 mail clamd[4380]: Bound to port 3310 
Oct  9 13:07:13 mail clamd[4380]: Setting connection queue length to 15 
Oct  9 13:07:13 mail clamd[4380]: Archive: Archived file size limit set to 104857600 bytes. 
Oct  9 13:07:13 mail clamd[4380]: Archive: Recursion level limit set to 8. 
Oct  9 13:07:13 mail clamd[4380]: Archive: Files limit set to 1000. 
Oct  9 13:07:13 mail clamd[4380]: Archive: Compression ratio limit set to 250. 
Oct  9 13:07:13 mail clamd[4380]: Archive support enabled. 
Oct  9 13:07:13 mail clamd[4380]: Archive: RAR support disabled. 
Oct  9 13:07:13 mail clamd[4380]: Portable Executable support enabled. 
Oct  9 13:07:13 mail clamd[4380]: Mail files support enabled. 
Oct  9 13:07:13 mail clamd[4380]: OLE2 support enabled. 
Oct  9 13:07:13 mail clamd[4380]: HTML support enabled. 
Oct  9 13:07:13 mail clamd[4380]: Self checking every 1800 seconds. 
Oct  9 13:07:15 mail zimbramon[2564]: 2564:info: start app mtaconfig 
Oct  9 13:07:16 mail zimbramon[2564]: 2564:info: Starting child mtaconfig: (20051009130716) 
Oct  9 13:07:19 mail zimbramon[2564]: 2564:info: STARTING antispam 
Oct  9 13:07:19 mail zimbramon[2564]: 2564:info: start service antispam 
Oct  9 13:07:19 mail zimbramon[2564]: 2564:info: start app amavisd 
Oct  9 13:07:19 mail zimbramon[2564]: 2564:err: Can't start running app amavisd 
Oct  9 13:07:19 mail zimbramon[2564]: 2564:info: start app mtaconfig 
Oct  9 13:07:20 mail zimbramon[2564]: 2564:err: Can't start running app mtaconfig 
Oct  9 13:07:20 mail zimbramon[2564]: 2564:info: STARTING mailbox 
Oct  9 13:07:20 mail zimbramon[2564]: 2564:info: start service mailbox 
Oct  9 13:07:20 mail zimbramon[2564]: 2564:info: start app mysql 
Oct  9 13:07:21 mail zimbramon[2564]: 2564:info: Starting child mysql: (20051009130721) 
Oct  9 13:07:25 mail zimbramon[2564]: 2564:info: start app tomcat 
Oct  9 13:07:25 mail zimbramon[2564]: 2564:info: Starting child tomcat: (20051009130725) 
Oct  9 13:07:26 mail zimbramon[2564]: 2564:info: STARTING mta 
Oct  9 13:07:26 mail zimbramon[2564]: 2564:info: start service mta 
Oct  9 13:07:26 mail zimbramon[2564]: 2564:info: start app saslauthd 
Oct  9 13:07:26 mail zimbramon[2564]: 2564:info: Starting child saslauthd: (20051009130726) 
Oct  9 13:07:38 mail zimbramon[2564]: 2564:info: start app mtaconfig 
Oct  9 13:07:38 mail zimbramon[2564]: 2564:err: Can't start running app mtaconfig 
Oct  9 13:07:38 mail zimbramon[2564]: 2564:info: start app postfix 
Oct  9 13:07:38 mail zimbramon[2564]: 2564:err: SMTP RESPONSE: FAILURE from localhost: problem connecting to "localhost", port 25: Connection refused 
Oct  9 13:07:38 mail zimbramon[2564]: 2564:info: Starting child postfix: (20051009130738) 
Oct  9 13:07:48 mail postfix/postfix-script: warning: not owned by root: /opt/zimbra/postfix-2.2.3/conf/main.cf
Oct  9 13:07:48 mail postfix/postfix-script: starting the Postfix mail system
Oct  9 13:07:48 mail zimbramon[2564]: 2564:err: SMTP RESPONSE: FAILURE from localhost: problem connecting to "localhost", port 25: Connection refused 
Oct  9 13:07:48 mail postfix/master[6935]: daemon started -- version 2.2.3, configuration /opt/zimbra/postfix-2.2.3/conf
Oct  9 13:07:48 mail postfix/qmgr[6937]: 860584C71C: from=, size=984, nrcpt=1 (queue active)
Oct  9 13:07:50 mail postfix/smtpd[6940]: initializing the server-side TLS engine
Oct  9 13:07:50 mail postfix/smtpd[6940]: connect from localhost.localdomain[127.0.0.1]
Oct  9 13:07:50 mail zimbramon[2564]: 2564:info: Doing startup 
Oct  9 13:07:50 mail postfix/smtpd[6940]: disconnect from localhost.localdomain[127.0.0.1]
Oct  9 13:07:51 mail zimbramon[6944]: 6944:info: Zimbra Monitor startup: 6944 
Oct  9 13:07:51 mail zimbramon[6944]: 6944:info: Process 4525 not found - removing /opt/zimbra/zimbramon/FIFO/zm.pid 
Oct  9 13:07:51 mail zimbramon[6975]: 6975:info: Status monitor startup 
Oct  9 13:07:51 mail zimbramon[6976]: 6976:info: Creating soap server on port 7777 
Oct  9 13:08:00 mail postfix/smtpd[6940]: connect from localhost.localdomain[127.0.0.1]
Oct  9 13:08:00 mail postfix/smtpd[6940]: disconnect from localhost.localdomain[127.0.0.1]
Oct  9 13:08:11 mail postfix/smtpd[6940]: connect from localhost.localdomain[127.0.0.1]
Oct  9 13:08:11 mail postfix/smtpd[6940]: disconnect from localhost.localdomain[127.0.0.1]
Oct  9 13:08:23 mail postfix/smtp[6939]: connect to gmail-smtp-in.l.google.com[64.233.163.27]: Connection timed out (port 25)
Oct  9 13:08:48 mail postfix/smtpd[6940]: connect from localhost.localdomain[127.0.0.1]
Oct  9 13:08:48 mail postfix/smtpd[6940]: disconnect from localhost.localdomain[127.0.0.1]
Oct  9 13:08:53 mail postfix/smtp[6939]: connect to gmail-smtp-in.l.google.com[64.233.163.114]: Connection timed out (port 25)
Oct  9 13:09:23 mail postfix/smtp[6939]: connect to gsmtp83-2.google.com[66.249.83.114]: Connection timed out (port 25)
Oct  9 13:09:24 mail postfix/smtpd[6940]: connect from localhost.localdomain[127.0.0.1]
Oct  9 13:09:24 mail postfix/smtpd[6940]: disconnect from localhost.localdomain[127.0.0.1]
Oct  9 13:09:53 mail postfix/smtp[6939]: connect to gsmtp185.google.com[64.233.185.27]: Connection timed out (port 25)
Oct  9 13:10:00 mail postfix/smtpd[6940]: connect from localhost.localdomain[127.0.0.1]
Oct  9 13:10:00 mail postfix/smtpd[6940]: disconnect from localhost.localdomain[127.0.0.1]
Oct  9 13:10:23 mail postfix/smtp[6939]: connect to gsmtp185-2.google.com[64.233.185.114]: Connection timed out (port 25)
Oct  9 13:10:36 mail postfix/smtpd[6940]: connect from localhost.localdomain[127.0.0.1]
Oct  9 13:10:36 mail postfix/smtpd[6940]: disconnect from localhost.localdomain[127.0.0.1]
The google lines are likely referring to a test e-mail I sent to my own gmail address to see if zimbra would time bounce back the request since 'domain.com' is obviously not a public domain and I have not set up DNS forwarding. No bounced request, and no email received at gmail as expected... so I think that one e-mail has been bouncing around inside zimba for a good day or so now :P

Perhaps that's a bug? If the domain isn't found shouldn't an 'unknown address' error come up within a few seconds? I'm reading through the admin guide and options now to see if I can set up a time out period or something.
Last edited by zcook : 10-09-2005 at 11:35 AM.
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Old 10-09-2005, 06:02 PM
KevinH KevinH is offline
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What are the specs on your server? CPU/MEM/HD/etc
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Old 10-10-2005, 05:47 AM
zcook zcook is offline
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Being a test server it's really just a powerful desktop.

Athlon 64 3500+
1gb of DDR400
450gb no raid
nVidia 6600GT
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Old 10-10-2005, 09:51 AM
KevinH KevinH is offline
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That seems plenty for test box. Is there any CPU load or memory paging going on? Are you testing locally or from a networked client machine? If a client what's the config of the client?

Can you be more specfic about which actions are slow? Loading messages for reading, calender, etc.
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Old 10-10-2005, 01:25 PM
anand anand is offline
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Default top or vmstat
what does

$ vmstat 5

report in terms of CPU usage?

top in kernels 2.6 -> 2.6.9.preRHEL4update2 does not show high CPU using processes whose non-main thread is causing the load. But you can still run top to see if one of the non-JVM processes is sucking all the CPU.

but like KevinH said, what are the symptoms of the slowness? (before we are off diagnosing server health)
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Old 12-27-2005, 03:44 PM
eger eger is offline
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I am also testing the Zimbra open source package in CentOS 4.x (RHEL 4 Clone) and am seeing the same problem. I was wondering if you modified you /etc/sysconfig/i18n file to remove the UTF strings?

Before I removed the UTF occurances in that file, Zimbra would spawn hundreds of unicode_start instances which would eventually bring the machine to a halt.

I thought this was the hanging problem also. But guess not.

I'd be interested if you have found a cure or know what is causing it.

Thanks!
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Old 12-27-2005, 03:47 PM
marcmac marcmac is offline
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Default version?
Which version of zimbra are you running?
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