Ok so here's how it was solved.
From the mailbox.log it seemed the upgrade process had somehow deleted the wiki@ system email address.
Check if it exists:
su - zimbra
zmprov gaa |grep
wiki@domain.com
If it does not exist, create it with following command:
su - zimbra
zmprov ca
wiki@domain.com password description "Global Documents account"
zmprov in
wiki@domain.com
zmprov impn
wiki@domain.com /opt/zimbra/wiki/Template Template
Then clear the browser cache and login to admin console.