Do you have any of the zmsetup.log available? Certainly going from various ZCS 5.0.x releases to 6.0.0 BETA1 was tested, and we haven't seen this issue, but there could be something specific to your setup that is causing the problem. It should be logged where things failed in the zmsetup.log that was generated when you ran the upgrade.
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Quanah Gibson-Mount
Sr. Member of Technical Staff
Zimbra, Inc
A Division of VMware, Inc.
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