Help! Upgrade problems from 5.09 to 5.10

[gtr33m]

I've screwed up my upgrade from 5.09 to 5.10

I think that the cause of the problem was an aborted attempt to merge Zimbra and Samba as per
Zimbra Integration With Samba - Ubuntu Based (Similar To AD And Exchange) - Page 3 | HowtoForge - Linux Howtos and Tutorials

I couldn't get the upgrade to process so I reversed the changes specified in the above link and ran the upgrade process.

The result of the upgrade process was:

PLEASE READ THIS AGREEMENT CAREFULLY BEFORE USING THE SOFTWARE.
ZIMBRA, INC. ("ZIMBRA") WILL ONLY LICENSE THIS SOFTWARE TO YOU IF YOU
FIRST ACCEPT THE TERMS OF THIS AGREEMENT. BY DOWNLOADING OR INSTALLING
THE SOFTWARE, OR USING THE PRODUCT, YOU ARE CONSENTING TO BE BOUND BY
THIS AGREEMENT. IF YOU DO NOT AGREE TO ALL OF THE TERMS OF THIS
AGREEMENT, THEN DO NOT DOWNLOAD, INSTALL OR USE THE PRODUCT.

License Terms for the Zimbra Collaboration Suite:
  http://www.zimbra.com/license/zimbra_public_eula_2.1.html


Press Return to continue

Checking for prerequisites...
    NPTL...FOUND
    sudo...FOUND sudo-1.6.9p10-1ubuntu3.3
    libidn11...FOUND libidn11-1.1-1
    libpcre3...FOUND libpcre3-7.4-1ubuntu2.1
    libgmp3c2...FOUND libgmp3c2-2:4.2.2+dfsg-1ubuntu2
    libexpat1...FOUND libexpat1-2.0.1-0ubuntu1
    libstdc++6...FOUND libstdc++6-4.2.4-1ubuntu3
    libstdc++5...FOUND libstdc++5-1:3.3.6-15ubuntu6
    libltdl3...FOUND libltdl3-1.5.26-1ubuntu1
Prerequisite check complete.
Checking for standard system perl...
    perl-5.8.8...FOUND standard system perl-5.8.8
Checking current number of databases...

Do you want to verify message store database integrity? [Y] N

Checking for installable packages

Found zimbra-core
Found zimbra-ldap
Found zimbra-logger
Found zimbra-mta
Found zimbra-snmp
Found zimbra-store
Found zimbra-apache
Found zimbra-spell
Found zimbra-proxy


The Zimbra Collaboration Suite appears already to be installed.
It can be upgraded with no effect on existing accounts,
or the current installation can be completely removed prior
to installation for a clean install.

Do you wish to upgrade? [Y] 

Select the packages to install
    Upgrading zimbra-core
    Upgrading zimbra-ldap
    Upgrading zimbra-logger
    Upgrading zimbra-mta
    Upgrading zimbra-snmp
    Upgrading zimbra-store

Install zimbra-apache [N] Y

Install zimbra-spell [N] Y

Install zimbra-proxy [N] 
Checking required space for zimbra-core
checking space for zimbra-store

Installing:
    zimbra-core
    zimbra-ldap
    zimbra-logger
    zimbra-mta
    zimbra-snmp
    zimbra-store
    zimbra-apache
    zimbra-spell

The system will be modified.  Continue? [N] Y

Shutting down zimbra mail
[sudo] password for zimbra: 
[sudo] password for zimbra: 

Backing up the ldap database...done.

Removing existing packages

   zimbra-ldap...done
   zimbra-logger...done
   zimbra-mta...done
   zimbra-snmp...done
   zimbra-store...done
   zimbra-core...done

Removing deployed webapp directories
Installing packages

    zimbra-core......zimbra-core_5.0.10_GA_2638.UBUNTU8_i386.deb...done
    zimbra-ldap......zimbra-ldap_5.0.10_GA_2638.UBUNTU8_i386.deb...done
    zimbra-logger......zimbra-logger_5.0.10_GA_2638.UBUNTU8_i386.deb...done
    zimbra-mta......zimbra-mta_5.0.10_GA_2638.UBUNTU8_i386.deb...done
    zimbra-snmp......zimbra-snmp_5.0.10_GA_2638.UBUNTU8_i386.deb...done
    zimbra-store......zimbra-store_5.0.10_GA_2638.UBUNTU8_i386.deb...done
    zimbra-apache......zimbra-apache_5.0.10_GA_2638.UBUNTU8_i386.deb...done
    zimbra-spell......zimbra-spell_5.0.10_GA_2638.UBUNTU8_i386.deb...done

Setting defaults from saved config in /opt/zimbra/.saveconfig/config.save
   HOSTNAME=localhost
   LDAPHOST=
   LDAPPORT=
   SNMPTRAPHOST=
   SMTPSOURCE=
   SMTPDEST=
   SNMPNOTIFY=0
   SMTPNOTIFY=0
   LDAPROOTPW=zimbra
   LDAPZIMBRAPW=zimbra
   LDAPPOSTPW=zmpostfix
   LDAPREPPW=zmreplica
   LDAPAMAVISPW=zmamavis
Restoring existing configuration file from /opt/zimbra/.saveconfig/config.save...done
Operations logged to /tmp/zmsetup.11122008-112353.log
ERROR: service.FAILURE (system failure: ZimbraLdapContext) (cause: javax.naming.CommunicationException localhost:389)
ERROR: service.FAILURE (system failure: ZimbraLdapContext) (cause: javax.naming.CommunicationException localhost:389)
Setting defaults...ERROR: service.FAILURE (system failure: ZimbraLdapContext) (cause: javax.naming.CommunicationException localhost:389)
done.
Upgrading from 5.0.9_GA_2533 to 5.0.10_GA_2638
Stopping zimbra services
Verifying /opt/zimbra/conf/my.cnf
Starting mysql

[gtr33m]

And the Install log:

COMMAND: zmlocalconfig -s | sed -e "s/ = \(.*\)/=\'\1\'/" > /opt/zimbra/.saveconfig/config.save
COMMAND: zmcontrol shutdown
Host localhost
	Stopping stats...Done
	Stopping mta...Done
	Stopping spell...Done
	Stopping snmp...Done
	Stopping archiving...Done
	Stopping antivirus...Done
	Stopping antispam...Done
	Stopping imapproxy...Done
	Stopping mailbox...Done
	Stopping logger...Done
	Stopping ldap...Done
Selecting previously deselected package zimbra-core.
(Reading database ... 
dpkg: serious warning: files list file for package `zimbra-store' missing, assuming package has no files currently installed.
125565 files and directories currently installed.)
Unpacking zimbra-core (from .../zimbra-core_5.0.10_GA_2638.UBUNTU8_i386.deb) ...
Setting up zimbra-core (5.0.10_GA_2638.UBUNTU8) ...
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: cannot access `/opt/zimbra/openldap/var': No such file or directory
chmod: missing operand after `755'
Try `chmod --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: cannot access `/opt/zimbra/clamav/db': No such file or directory
chown: cannot access `/opt/zimbra/amavisd/sbin': No such file or directory
chmod: cannot access `/opt/zimbra/postfix/conf/postfix-script': No such file or directory
chmod: cannot access `/opt/zimbra/postfix/conf/post-install': No such file or directory
Loading classes to share ... done. 
Rewriting and unlinking classes ... done. 
Calculating hash values for String objects .. done. 
Calculating fingerprints ... done. 
Removing unshareable information ... done. 
Moving most read-only objects to shared space at 0x90920000 ... done. 
Moving common symbols to shared space at 0x90c9d938 ... done. 
Moving remaining symbols to shared space at 0x90dcaa68 ... done. 
Moving string char arrays to shared space at 0x90dcb4f8 ... done. 
Moving additional symbols to shared space at 0x90e4e070 ... done. 
Read-only space ends at 0x90ea2e10, 5778960 bytes.
Moving read-write objects to shared space at 0x91120000 ... done. 
Moving String objects to shared space at 0x916b0e40 ... done. 
Read-write space ends at 0x916f1640, 6100544 bytes.
Updating references to shared objects ... done. 


Processing triggers for libc6 ...
ldconfig deferred processing now taking place
Selecting previously deselected package zimbra-ldap.
(Reading database ... 
dpkg: serious warning: files list file for package `zimbra-store' missing, assuming package has no files currently installed.
132174 files and directories currently installed.)
Unpacking zimbra-ldap (from .../zimbra-ldap_5.0.10_GA_2638.UBUNTU8_i386.deb) ...
Setting up zimbra-ldap (5.0.10_GA_2638.UBUNTU8) ...
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: cannot access `/opt/zimbra/clamav/db': No such file or directory
chown: cannot access `/opt/zimbra/amavisd/sbin': No such file or directory
chmod: cannot access `/opt/zimbra/postfix/conf/postfix-script': No such file or directory
chmod: cannot access `/opt/zimbra/postfix/conf/post-install': No such file or directory

Processing triggers for libc6 ...
ldconfig deferred processing now taking place
Selecting previously deselected package zimbra-logger.
(Reading database ... 
dpkg: serious warning: files list file for package `zimbra-store' missing, assuming package has no files currently installed.
132565 files and directories currently installed.)
Unpacking zimbra-logger (from .../zimbra-logger_5.0.10_GA_2638.UBUNTU8_i386.deb) ...
Setting up zimbra-logger (5.0.10_GA_2638.UBUNTU8) ...
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: cannot access `/opt/zimbra/clamav/db': No such file or directory
chown: cannot access `/opt/zimbra/amavisd/sbin': No such file or directory
chmod: cannot access `/opt/zimbra/postfix/conf/postfix-script': No such file or directory
chmod: cannot access `/opt/zimbra/postfix/conf/post-install': No such file or directory

Selecting previously deselected package zimbra-mta.
(Reading database ... 
dpkg: serious warning: files list file for package `zimbra-store' missing, assuming package has no files currently installed.
134561 files and directories currently installed.)
Unpacking zimbra-mta (from .../zimbra-mta_5.0.10_GA_2638.UBUNTU8_i386.deb) ...
Setting up zimbra-mta (5.0.10_GA_2638.UBUNTU8) ...
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.

Processing triggers for libc6 ...
ldconfig deferred processing now taking place
Selecting previously deselected package zimbra-snmp.
(Reading database ... 
dpkg: serious warning: files list file for package `zimbra-store' missing, assuming package has no files currently installed.
134818 files and directories currently installed.)
Unpacking zimbra-snmp (from .../zimbra-snmp_5.0.10_GA_2638.UBUNTU8_i386.deb) ...
Setting up zimbra-snmp (5.0.10_GA_2638.UBUNTU8) ...
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.

Selecting previously deselected package zimbra-store.
(Reading database ... 
dpkg: serious warning: files list file for package `zimbra-store' missing, assuming package has no files currently installed.
135366 files and directories currently installed.)
Preparing to replace zimbra-store 5.0.10_GA_2638.UBUNTU8 (using .../zimbra-store_5.0.10_GA_2638.UBUNTU8_i386.deb) ...
Unpacking replacement zimbra-store ...
Setting up zimbra-store (5.0.10_GA_2638.UBUNTU8) ...
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.
ln -s /opt/zimbra/jetty-6.1.5 /opt/zimbra/jetty
Relinking mailboxd to /opt/zimbra/jetty-6.1.5
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: missing operand after `root:root'
Try `chown --help' for more information.

Selecting previously deselected package zimbra-apache.
(Reading database ... 153106 files and directories currently installed.)
Unpacking zimbra-apache (from .../zimbra-apache_5.0.10_GA_2638.UBUNTU8_i386.deb) ...
Setting up zimbra-apache (5.0.10_GA_2638.UBUNTU8) ...

Selecting previously deselected package zimbra-spell.
(Reading database ... 154305 files and directories currently installed.)
Unpacking zimbra-spell (from .../zimbra-spell_5.0.10_GA_2638.UBUNTU8_i386.deb) ...
Setting up zimbra-spell (5.0.10_GA_2638.UBUNTU8) ...

COMMAND: zmlocalconfig -f -e calendar_allow_null_organizer_with_attendees='false'
COMMAND: zmlocalconfig -f -e calendar_cache_directory='${zimbra_home}/store/calcache'
COMMAND: zmlocalconfig -f -e calendar_cache_enabled='false'
COMMAND: zmlocalconfig -f -e calendar_cache_lru_size='1000'
COMMAND: zmlocalconfig -f -e calendar_cache_range_month_from='0'
COMMAND: zmlocalconfig -f -e calendar_cache_range_months='3'
COMMAND: zmlocalconfig -f -e calendar_canonical_tzid='windows'
COMMAND: zmlocalconfig -f -e calendar_entourage_compatible_timezones='true'
COMMAND: zmlocalconfig -f -e calendar_ics_export_buffer_size='131072'
COMMAND: zmlocalconfig -f -e calendar_ics_import_full_parse_max_size='131072'
COMMAND: zmlocalconfig -f -e calendar_outlook_compatible_allday_events='true'
COMMAND: zmlocalconfig -f -e convertd_version='1'
COMMAND: zmlocalconfig -f -e data_source_fetch_size='5'
COMMAND: zmlocalconfig -f -e data_source_max_message_memory_size='2097152'
COMMAND: zmlocalconfig -f -e data_source_new_sync_enabled='false'
COMMAND: zmlocalconfig -f -e data_source_trust_self_signed_certs='false'
COMMAND: zmlocalconfig -f -e debug_mailboxindex_use_new_locking='true'
COMMAND: zmlocalconfig -f -e debug_update_config_use_old_scheme='false'
COMMAND: zmlocalconfig -f -e debug_xmpp_disable_client_tls='0'
COMMAND: zmlocalconfig -f -e im_dnsutil_dnsoverride=''
COMMAND: zmlocalconfig -f -e javamail_imap_debug='false'
COMMAND: zmlocalconfig -f -e javamail_imap_enable_starttls='true'
COMMAND: zmlocalconfig -f -e javamail_imap_timeout='60'
COMMAND: zmlocalconfig -f -e javamail_pop3_debug='false'
COMMAND: zmlocalconfig -f -e javamail_pop3_enable_starttls='true'
COMMAND: zmlocalconfig -f -e javamail_pop3_timeout='60'
COMMAND: zmlocalconfig -f -e javamail_smtp_debug='false'
COMMAND: zmlocalconfig -f -e javamail_smtp_enable_starttls='true'
COMMAND: zmlocalconfig -f -e javamail_smtp_timeout='60'
COMMAND: zmlocalconfig -f -e krb5_debug_enabled='false'
COMMAND: zmlocalconfig -f -e krb5_keytab='${zimbra_home}/conf/krb5.keytab'
COMMAND: zmlocalconfig -f -e krb5_service_principal_from_interface_address='false'
COMMAND: zmlocalconfig -f -e ldap_amavis_password='zmamavis'
COMMAND: zmlocalconfig -f -e ldap_bind_url=''
COMMAND: zmlocalconfig -f -e ldap_cache_account_maxage='15'
COMMAND: zmlocalconfig -f -e ldap_cache_account_maxsize='20000'
COMMAND: zmlocalconfig -f -e ldap_cache_cos_maxage='15'
COMMAND: zmlocalconfig -f -e ldap_cache_cos_maxsize='100'
COMMAND: zmlocalconfig -f -e ldap_cache_domain_maxage='15'
COMMAND: zmlocalconfig -f -e ldap_cache_domain_maxsize='100'
COMMAND: zmlocalconfig -f -e ldap_cache_group_maxage='15'
COMMAND: zmlocalconfig -f -e ldap_cache_group_maxsize='200'
COMMAND: zmlocalconfig -f -e ldap_cache_reverseproxylookup_domain_maxage='15'
COMMAND: zmlocalconfig -f -e ldap_cache_reverseproxylookup_domain_maxsize='100'
COMMAND: zmlocalconfig -f -e ldap_cache_reverseproxylookup_server_maxage='15'
COMMAND: zmlocalconfig -f -e ldap_cache_reverseproxylookup_server_maxsize='100'
COMMAND: zmlocalconfig -f -e ldap_cache_server_maxage='15'
COMMAND: zmlocalconfig -f -e ldap_cache_server_maxsize='100'
COMMAND: zmlocalconfig -f -e ldap_cache_timezone_maxsize='100'
COMMAND: zmlocalconfig -f -e ldap_cache_zimlet_maxage='15'
COMMAND: zmlocalconfig -f -e ldap_cache_zimlet_maxsize='100'
COMMAND: zmlocalconfig -f -e ldap_connect_pool_debug='false'
COMMAND: zmlocalconfig -f -e ldap_connect_pool_initsize='1'
COMMAND: zmlocalconfig -f -e ldap_connect_pool_master='false'
COMMAND: zmlocalconfig -f -e ldap_connect_pool_maxsize='50'
COMMAND: zmlocalconfig -f -e ldap_connect_pool_prefsize='0'
COMMAND: zmlocalconfig -f -e ldap_connect_pool_timeout='120000'
COMMAND: zmlocalconfig -f -e ldap_connect_timeout='30000'
COMMAND: zmlocalconfig -f -e ldap_deref_aliases='always'
COMMAND: zmlocalconfig -f -e ldap_host=''
COMMAND: zmlocalconfig -f -e ldap_is_master='false'
COMMAND: zmlocalconfig -f -e ldap_log_level='49152'
COMMAND: zmlocalconfig -f -e ldap_master_url=''
COMMAND: zmlocalconfig -f -e ldap_nginx_password='zmnginx'
COMMAND: zmlocalconfig -f -e ldap_port=''
COMMAND: zmlocalconfig -f -e ldap_postfix_password='zmpostfix'
COMMAND: zmlocalconfig -f -e ldap_read_timeout='30000'
COMMAND: zmlocalconfig -f -e ldap_replication_password='zmreplica'
COMMAND: zmlocalconfig -f -e ldap_require_tls='false'
COMMAND: zmlocalconfig -f -e ldap_root_password='zimbra'
COMMAND: zmlocalconfig -f -e ldap_starttls_supported='0'
COMMAND: zmlocalconfig -f -e ldap_url=''
COMMAND: zmlocalconfig -f -e localized_client_msgs_directory='${mailboxd_directory}/webapps/zimbra/WEB-INF/classes/messages'
COMMAND: zmlocalconfig -f -e localized_msgs_directory='${zimbra_home}/conf/msgs'
COMMAND: zmlocalconfig -f -e logger_mysql_bind_address='localhost'
COMMAND: zmlocalconfig -f -e logger_mysql_data_directory='${zimbra_home}/logger/db/data'
COMMAND: zmlocalconfig -f -e logger_mysql_directory='${zimbra_home}/logger/mysql'
COMMAND: zmlocalconfig -f -e logger_mysql_errlogfile='${zimbra_home}/log/logger_mysql_error.log'
COMMAND: zmlocalconfig -f -e logger_mysql_mycnf='${zimbra_home}/conf/my.logger.cnf'
COMMAND: zmlocalconfig -f -e logger_mysql_pidfile='${zimbra_home}/logger/db/mysql.pid'
COMMAND: zmlocalconfig -f -e logger_mysql_port='7307'
COMMAND: zmlocalconfig -f -e logger_mysql_socket='${zimbra_home}/logger/db/mysql.sock'
COMMAND: zmlocalconfig -f -e mailboxd_directory='${zimbra_home}/mailboxd'
COMMAND: zmlocalconfig -f -e mailboxd_java_heap_memory_percent='30'
COMMAND: zmlocalconfig -f -e mailboxd_java_home='${zimbra_java_home}'
COMMAND: zmlocalconfig -f -e mailboxd_java_options='-client -XX:NewRatio=2 -Djava.awt.headless=true -XX:MaxPermSize=128m -XX:SoftRefLRUPolicyMSPerMB=1'
COMMAND: zmlocalconfig -f -e mailboxd_keystore='${mailboxd_directory}/etc/keystore'
COMMAND: zmlocalconfig -f -e mailboxd_keystore_password='zimbra'
COMMAND: zmlocalconfig -f -e mailboxd_output_file='${zimbra_log_directory}/zmmailboxd.out'
COMMAND: zmlocalconfig -f -e mailboxd_output_rotate_interval='86400'
COMMAND: zmlocalconfig -f -e mailboxd_pidfile='${zimbra_log_directory}/mailboxd.pid'
COMMAND: zmlocalconfig -f -e mailboxd_thread_stack_size='256k'
COMMAND: zmlocalconfig -f -e mailboxd_truststore='${zimbra_java_home}/lib/security/cacerts'
COMMAND: zmlocalconfig -f -e mailboxd_truststore_password='changeit'
COMMAND: zmlocalconfig -f -e mysql_bind_address='localhost'
COMMAND: zmlocalconfig -f -e mysql_data_directory='${zimbra_db_directory}/data'
COMMAND: zmlocalconfig -f -e mysql_directory='${zimbra_home}/mysql'
COMMAND: zmlocalconfig -f -e mysql_errlogfile='${zimbra_home}/log/mysql_error.log'
COMMAND: zmlocalconfig -f -e mysql_innodb_log_buffer_size='8388608'
COMMAND: zmlocalconfig -f -e mysql_innodb_log_file_size='104857600'
COMMAND: zmlocalconfig -f -e mysql_memory_percent='40'
COMMAND: zmlocalconfig -f -e mysql_mycnf='${zimbra_home}/conf/my.cnf'
COMMAND: zmlocalconfig -f -e mysql_pidfile='${zimbra_db_directory}/mysql.pid'
COMMAND: zmlocalconfig -f -e mysql_port='7306'
COMMAND: zmlocalconfig -f -e mysql_read_buffer_size='1048576'
COMMAND: zmlocalconfig -f -e mysql_root_password='zimbra'
COMMAND: zmlocalconfig -f -e mysql_socket='${zimbra_db_directory}/mysql.sock'
COMMAND: zmlocalconfig -f -e mysql_sort_buffer_size='1048576'
COMMAND: zmlocalconfig -f -e mysql_table_cache='500'
COMMAND: zmlocalconfig -f -e nio_debug_enabled='false'
COMMAND: zmlocalconfig -f -e nio_enabled='false'
COMMAND: zmlocalconfig -f -e nio_imap_enabled='false'
COMMAND: zmlocalconfig -f -e nio_imap_log_buffers='false'
COMMAND: zmlocalconfig -f -e nio_lmtp_enabled='false'
COMMAND: zmlocalconfig -f -e nio_pop3_enabled='false'
COMMAND: zmlocalconfig -f -e postfix_alias_maps='hash:/etc/aliases'
COMMAND: zmlocalconfig -f -e postfix_broken_sasl_auth_clients='yes'
COMMAND: zmlocalconfig -f -e postfix_command_directory='${zimbra_home}/postfix/sbin'
COMMAND: zmlocalconfig -f -e postfix_daemon_directory='${zimbra_home}/postfix/libexec'
COMMAND: zmlocalconfig -f -e postfix_header_checks='pcre:${zimbra_home}/conf/postfix_header_checks'
COMMAND: zmlocalconfig -f -e postfix_in_flow_delay='1s'
COMMAND: zmlocalconfig -f -e postfix_lmtp_connection_cache_destinations=''
COMMAND: zmlocalconfig -f -e postfix_lmtp_connection_cache_time_limit='4s'
COMMAND: zmlocalconfig -f -e postfix_lmtp_host_lookup='dns'
COMMAND: zmlocalconfig -f -e postfix_mailq_path='${zimbra_home}/postfix/sbin/mailq'

[gtr33m]

install log part 2

COMMAND: zmlocalconfig -f -e postfix_manpage_directory='${zimbra_home}/postfix/man'
COMMAND: zmlocalconfig -f -e postfix_maximal_backoff_time='4000s'
COMMAND: zmlocalconfig -f -e postfix_minimal_backoff_time='300s'
COMMAND: zmlocalconfig -f -e postfix_newaliases_path='${zimbra_home}/postfix/sbin/newaliases'
COMMAND: zmlocalconfig -f -e postfix_queue_directory='${zimbra_home}/data/postfix/spool'
COMMAND: zmlocalconfig -f -e postfix_queue_run_delay='300s'
COMMAND: zmlocalconfig -f -e postfix_sender_canonical_maps='proxy:ldap:${zimbra_home}/conf/ldap-scm.cf'
COMMAND: zmlocalconfig -f -e postfix_sendmail_path='${zimbra_home}/postfix/sbin/sendmail'
COMMAND: zmlocalconfig -f -e postfix_smtpd_client_restrictions='reject_unauth_pipelining'
COMMAND: zmlocalconfig -f -e postfix_smtpd_data_restrictions='reject_unauth_pipelining'
COMMAND: zmlocalconfig -f -e postfix_smtpd_helo_required='yes'
COMMAND: zmlocalconfig -f -e postfix_smtpd_tls_cert_file='${zimbra_home}/conf/smtpd.crt'
COMMAND: zmlocalconfig -f -e postfix_smtpd_tls_key_file='${zimbra_home}/conf/smtpd.key'
COMMAND: zmlocalconfig -f -e postfix_smtpd_tls_loglevel='1'
COMMAND: zmlocalconfig -f -e postfix_transport_maps='proxy:ldap:${zimbra_home}/conf/ldap-transport.cf'
COMMAND: zmlocalconfig -f -e postfix_version='2.4.7.5z'
COMMAND: zmlocalconfig -f -e postfix_virtual_alias_domains='proxy:ldap:${zimbra_home}/conf/ldap-vad.cf'
COMMAND: zmlocalconfig -f -e postfix_virtual_alias_maps='proxy:ldap:${zimbra_home}/conf/ldap-vam.cf'
COMMAND: zmlocalconfig -f -e postfix_virtual_mailbox_domains='proxy:ldap:${zimbra_home}/conf/ldap-vmd.cf'
COMMAND: zmlocalconfig -f -e postfix_virtual_mailbox_maps='proxy:ldap:${zimbra_home}/conf/ldap-vmm.cf'
COMMAND: zmlocalconfig -f -e postfix_virtual_transport='error'
COMMAND: zmlocalconfig -f -e purge_initial_sleep_ms='1800000'
COMMAND: zmlocalconfig -f -e search_dbfirst_term_percentage_cutoff='0.8'
COMMAND: zmlocalconfig -f -e search_disable_database_hints='false'
COMMAND: zmlocalconfig -f -e skins_directory='${mailboxd_directory}/webapps/zimbra/skins'
COMMAND: zmlocalconfig -f -e soap_max_in_memory_buffer_size='0'
COMMAND: zmlocalconfig -f -e ssl_allow_mismatched_certs='true'
COMMAND: zmlocalconfig -f -e ssl_allow_untrusted_certs='false'
COMMAND: zmlocalconfig -f -e stats_img_folder='${zimbra_home}/logger/db/work'
COMMAND: zmlocalconfig -f -e timezone_file='${zimbra_home}/conf/timezones.ics'
COMMAND: zmlocalconfig -f -e wiki_enabled='false'
COMMAND: zmlocalconfig -f -e wiki_user='wiki'
COMMAND: zmlocalconfig -f -e xmpp_client_compression_policy='optional'
COMMAND: zmlocalconfig -f -e xmpp_client_idle_timeout='600000'
COMMAND: zmlocalconfig -f -e xmpp_client_write_timeout='60000'
COMMAND: zmlocalconfig -f -e xmpp_cloudrouting_idle_timeout='300000'
COMMAND: zmlocalconfig -f -e xmpp_dns_override=''
COMMAND: zmlocalconfig -f -e xmpp_muc_default_history_type='number'
COMMAND: zmlocalconfig -f -e xmpp_muc_discover_locked='true'
COMMAND: zmlocalconfig -f -e xmpp_muc_enabled='true'
COMMAND: zmlocalconfig -f -e xmpp_muc_history_number='25'
COMMAND: zmlocalconfig -f -e xmpp_muc_idle_user_sweep_ms='300000'
COMMAND: zmlocalconfig -f -e xmpp_muc_idle_user_timeout_ms='0'
COMMAND: zmlocalconfig -f -e xmpp_muc_log_batch_size='50'
COMMAND: zmlocalconfig -f -e xmpp_muc_log_sweep_time_ms='300000'
COMMAND: zmlocalconfig -f -e xmpp_muc_restrict_room_creation='Should MUC room creation be restricted to only those JIDs listed in xmpp_muc_room_create_jid_list?'
COMMAND: zmlocalconfig -f -e xmpp_muc_room_create_jid_list=''
COMMAND: zmlocalconfig -f -e xmpp_muc_service_name='conference'
COMMAND: zmlocalconfig -f -e xmpp_muc_sysadmin_jid_list=''
COMMAND: zmlocalconfig -f -e xmpp_muc_unload_empty_hours='5'
COMMAND: zmlocalconfig -f -e xmpp_offline_quota='102400'
COMMAND: zmlocalconfig -f -e xmpp_offline_type='store_and_drop'
COMMAND: zmlocalconfig -f -e xmpp_private_storage_enabled='true'
COMMAND: zmlocalconfig -f -e xmpp_server_certificate_accept_selfsigned='true'
COMMAND: zmlocalconfig -f -e xmpp_server_certificate_verify='false'
COMMAND: zmlocalconfig -f -e xmpp_server_certificate_verify_chain='true'
COMMAND: zmlocalconfig -f -e xmpp_server_certificate_verify_root='true'
COMMAND: zmlocalconfig -f -e xmpp_server_certificate_verify_validity='true'
COMMAND: zmlocalconfig -f -e xmpp_server_compression_policy='disabled'
COMMAND: zmlocalconfig -f -e xmpp_server_dialback_enabled='true'
COMMAND: zmlocalconfig -f -e xmpp_server_outgoing_max_threads='20'
COMMAND: zmlocalconfig -f -e xmpp_server_outgoing_queue='50'
COMMAND: zmlocalconfig -f -e xmpp_server_processing_core_threads='2'
COMMAND: zmlocalconfig -f -e xmpp_server_processing_max_threads='50'
COMMAND: zmlocalconfig -f -e xmpp_server_processing_queue='50'
COMMAND: zmlocalconfig -f -e xmpp_server_read_timeout='180000'
COMMAND: zmlocalconfig -f -e xmpp_server_session_allowmultiple='true'
COMMAND: zmlocalconfig -f -e xmpp_server_session_idle='1200000'
COMMAND: zmlocalconfig -f -e xmpp_server_session_idle_check_time='300000'
COMMAND: zmlocalconfig -f -e xmpp_server_socket_remoteport='5269'
COMMAND: zmlocalconfig -f -e xmpp_server_tls_enabled='true'
COMMAND: zmlocalconfig -f -e xmpp_session_conflict_limit='0'
COMMAND: zmlocalconfig -f -e zimbra_admin_service_port='7071'
COMMAND: zmlocalconfig -f -e zimbra_admin_service_scheme='https://'
COMMAND: zmlocalconfig -f -e zimbra_admin_waitset_default_request_timeout='300'
COMMAND: zmlocalconfig -f -e zimbra_admin_waitset_max_request_timeout='3600'
COMMAND: zmlocalconfig -f -e zimbra_admin_waitset_min_request_timeout='0'
COMMAND: zmlocalconfig -f -e zimbra_attrs_directory='${zimbra_home}/conf/attrs'
COMMAND: zmlocalconfig -f -e zimbra_auth_always_send_refer='false'
COMMAND: zmlocalconfig -f -e zimbra_auth_provider='zimbra'
COMMAND: zmlocalconfig -f -e zimbra_authtoken_cookie_domain=''
COMMAND: zmlocalconfig -f -e zimbra_blob_input_stream_buffer_size_kb='1'
COMMAND: zmlocalconfig -f -e zimbra_class_accessmanager='com.zimbra.cs.account.accesscontrol.AclAccessManager'
COMMAND: zmlocalconfig -f -e zimbra_class_application='com.zimbra.cs.util.ZimbraApplication'
COMMAND: zmlocalconfig -f -e zimbra_class_database='com.zimbra.cs.db.MySQL'
COMMAND: zmlocalconfig -f -e zimbra_class_mboxmanager='com.zimbra.cs.mailbox.MailboxManager'
COMMAND: zmlocalconfig -f -e zimbra_class_provisioning='com.zimbra.cs.account.ldap.LdapProvisioning'
COMMAND: zmlocalconfig -f -e zimbra_class_rulerewriterfactory='com.zimbra.cs.filter.RuleRewriterFactory'
COMMAND: zmlocalconfig -f -e zimbra_converter_depth_max='100'
COMMAND: zmlocalconfig -f -e zimbra_converter_enabled_tnef='true'
COMMAND: zmlocalconfig -f -e zimbra_converter_enabled_uuencode='true'
COMMAND: zmlocalconfig -f -e zimbra_csv_mapping_file='${zimbra_home}/conf/zimbra-contact-fields.xml'
COMMAND: zmlocalconfig -f -e zimbra_db_directory='${zimbra_home}/db'
COMMAND: zmlocalconfig -f -e zimbra_extension_common_directory='${zimbra_home}/lib/ext-common'
COMMAND: zmlocalconfig -f -e zimbra_extension_directory='${zimbra_home}/lib/ext'
COMMAND: zmlocalconfig -f -e zimbra_gid='-1'
COMMAND: zmlocalconfig -f -e zimbra_home='/opt/zimbra'
COMMAND: zmlocalconfig -f -e zimbra_http_originating_ip_header='X-Originating-IP'
COMMAND: zmlocalconfig -f -e zimbra_im_chat_close_time='3600'
COMMAND: zmlocalconfig -f -e zimbra_im_chat_flush_time='300'
COMMAND: zmlocalconfig -f -e zimbra_index_deferred_items_delay='10'
COMMAND: zmlocalconfig -f -e zimbra_index_deferred_items_failure_delay='300'
COMMAND: zmlocalconfig -f -e zimbra_index_directory='${zimbra_home}/index'
COMMAND: zmlocalconfig -f -e zimbra_index_idle_flush_time='600'
COMMAND: zmlocalconfig -f -e zimbra_index_lru_size='100'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_autocommit='false'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_batch_autocommit='false'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_batch_max_buffered_docs='200'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_batch_max_merge='2147483647'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_batch_merge_factor='10'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_batch_min_merge='1000'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_batch_ram_buffer_size_kb='10240'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_batch_use_compound_file='true'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_batch_use_doc_scheduler='true'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_batch_use_serial_merge_scheduler='true'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_nobatch_autocommit='false'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_nobatch_max_buffered_docs='200'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_nobatch_max_merge='2147483647'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_nobatch_merge_factor='3'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_nobatch_min_merge='10'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_nobatch_ram_buffer_size_kb='10240'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_nobatch_use_compound_file='true'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_nobatch_use_doc_scheduler='true'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_nobatch_use_serial_merge_scheduler='true'
COMMAND: zmlocalconfig -f -e zimbra_index_max_transaction_bytes='1000000'
COMMAND: zmlocalconfig -f -e zimbra_index_max_transaction_items='100'
COMMAND: zmlocalconfig -f -e zimbra_index_max_uncommitted_operations='200'
COMMAND: zmlocalconfig -f -e zimbra_index_reader_idle_flush_time='300'
COMMAND: zmlocalconfig -f -e zimbra_index_reader_idle_sweep_frequency='30'
COMMAND: zmlocalconfig -f -e zimbra_index_reader_lru_size='20'
COMMAND: zmlocalconfig -f -e zimbra_index_sweep_frequency='30'
COMMAND: zmlocalconfig -f -e zimbra_index_use_nfs_deletion_policy='false'
COMMAND: zmlocalconfig -f -e zimbra_index_use_reader_reopen='false'
COMMAND: zmlocalconfig -f -e zimbra_java_home='${zimbra_home}/java'
COMMAND: zmlocalconfig -f -e zimbra_ldap_password='zimbra'
COMMAND: zmlocalconfig -f -e zimbra_ldap_user='zimbra'
COMMAND: zmlocalconfig -f -e zimbra_ldap_userdn='uid=zimbra,cn=admins,cn=zimbra'
COMMAND: zmlocalconfig -f -e zimbra_log4j_properties='${zimbra_home}/conf/log4j.properties'
COMMAND: zmlocalconfig -f -e zimbra_log_directory='${zimbra_home}/log'
COMMAND: zmlocalconfig -f -e zimbra_logger_mysql_password='zimbra'
COMMAND: zmlocalconfig -f -e zimbra_mailbox_active_cache='500'
COMMAND: zmlocalconfig -f -e zimbra_mailbox_change_checkpoint_frequency='100'
COMMAND: zmlocalconfig -f -e zimbra_mailbox_groups='100'
COMMAND: zmlocalconfig -f -e zimbra_mailbox_inactive_cache='30'
COMMAND: zmlocalconfig -f -e zimbra_mailbox_manager_hardref_cache='2500'
COMMAND: zmlocalconfig -f -e zimbra_mtareport_max_recipients='50'
COMMAND: zmlocalconfig -f -e zimbra_mtareport_max_senders='50'
COMMAND: zmlocalconfig -f -e zimbra_mysql_password='zimbra'
COMMAND: zmlocalconfig -f -e zimbra_mysql_user='zimbra'
COMMAND: zmlocalconfig -f -e zimbra_nio_file_copy_chunk_size_kb='512'
COMMAND: zmlocalconfig -f -e zimbra_noop_default_timeout='300'
COMMAND: zmlocalconfig -f -e zimbra_noop_max_timeout='1200'
COMMAND: zmlocalconfig -f -e zimbra_noop_min_timeout='30'
COMMAND: zmlocalconfig -f -e zimbra_require_interprocess_security='1'
COMMAND: zmlocalconfig -f -e zimbra_rights_directory='${zimbra_home}/conf/rights'
COMMAND: zmlocalconfig -f -e zimbra_server_hostname='localhost'
COMMAND: zmlocalconfig -f -e zimbra_session_limit_imap='5'
COMMAND: zmlocalconfig -f -e zimbra_session_max_pending_notifications='400'
COMMAND: zmlocalconfig -f -e zimbra_session_timeout_soap='600'
COMMAND: zmlocalconfig -f -e zimbra_spam_report_queue_size='100'
COMMAND: zmlocalconfig -f -e zimbra_ssl_enabled='true'
COMMAND: zmlocalconfig -f -e zimbra_store_copy_buffer_size_kb='16'
COMMAND: zmlocalconfig -f -e zimbra_store_directory='${zimbra_home}/store'
COMMAND: zmlocalconfig -f -e zimbra_store_sweeper_max_age='480'
COMMAND: zmlocalconfig -f -e zimbra_throttle_op_concurrency='1000,1000,1000,1000,1000'
COMMAND: zmlocalconfig -f -e zimbra_tmp_directory='/tmp/zimbra'
COMMAND: zmlocalconfig -f -e zimbra_uid='-1'
COMMAND: zmlocalconfig -f -e zimbra_user='zimbra'
COMMAND: zmlocalconfig -f -e zimbra_waitset_default_request_timeout='300'
COMMAND: zmlocalconfig -f -e zimbra_waitset_initial_sleep_time='1000'
COMMAND: zmlocalconfig -f -e zimbra_waitset_max_per_account='5'
COMMAND: zmlocalconfig -f -e zimbra_waitset_max_request_timeout='1200'
COMMAND: zmlocalconfig -f -e zimbra_waitset_min_request_timeout='30'
COMMAND: zmlocalconfig -f -e zimbra_waitset_nodata_sleep_time='3000'
COMMAND: zmlocalconfig -f -e zimbra_zmprov_default_soap_server='localhost'
COMMAND: zmlocalconfig -f -e zimbra_zmprov_default_to_ldap='false'
COMMAND: zmlocalconfig -f -e zimlet_directory='${mailboxd_directory}/webapps/service/zimlet'
COMMAND: zmlocalconfig -f -e zmmtaconfig_enable_config_restarts='TRUE'
COMMAND: zmlocalconfig -f -e zmstat_interval='30'
COMMAND: zmlocalconfig -f -e zmstat_log_directory='${zimbra_home}/zmstat'

Searching the forums, there is a similar problem at post
http://www.zimbra.com/forums/install...5-release.html

Where the proposed solution (without a confirmation of resolution) is to reset the ldap and mysql passwords. Unfortunately, running zmldappasswd also gives an error

zimbra@server1:/bin$ zmldappasswd  -r xxxx
Updating local config and directory
IO::Socket::INET: Bad hostname '' at /opt/zimbra/bin/zmldappasswd line 70,  line 253.

I suspect that my ldap configuration has somehow been corrupted, but the whole thing is way over my head.

Can anyone point me in the right direction. Perhaps I'm just not searching the forum correctly.

Thanks,

Mark

[gtr33m]

my /etc/hosts file:

127.0.0.1	localhost.localdomain	localhost
192.168.2.5	server1.medalist.com.au	server1
192.168.2.5	mail.medalist.com.au server1

# The following lines are desirable for IPv6 capable hosts
::1     ip6-localhost ip6-loopback
fe00::0 ip6-localnet
ff00::0 ip6-mcastprefix
ff02::1 ip6-allnodes
ff02::2 ip6-allrouters
ff02::3 ip6-allhosts

[gtr33m]

I've managed to progress a bit.

It seems that running the upgrade a second time has created a blank config.save file, so every subsequent upgrade has failed because the config file was empty.

I ran the upgrade again, this time I copied over a config.save file from the 5.0.9 backup to the /.saveconfig/config.save before accepting the licence. The rest of the upgrade proceeded as follows:

Setting defaults from saved config in /opt/zimbra/.saveconfig/config.save
   HOSTNAME=server1.medalist.com.au
   LDAPHOST=server1.medalist.com.au
   LDAPPORT=389
   SNMPTRAPHOST=server1.medalist.com.au
   SMTPSOURCE=admin@medalist.com.au
   SMTPDEST=admin@medalist.com.au
   SNMPNOTIFY=yes
   SMTPNOTIFY=yes
   LDAPROOTPW=*
   LDAPZIMBRAPW=*
   LDAPPOSTPW=*
   LDAPREPPW=*
   LDAPAMAVISPW=*
Restoring existing configuration file from /opt/zimbra/.saveconfig/config.save...done
Operations logged to /tmp/zmsetup.11122008-160121.log
Starting ldap...done.
Setting defaults...done.
Upgrading from 5.0.9_GA_2533 to 5.0.10_GA_2638
Stopping zimbra services
Verifying /opt/zimbra/conf/my.cnf
Starting mysql

For some reason it hangs on starting mysql.

Plenty of people seem to have had this issue with 5.0.10, but no one seems to have posted a solution.

Any help?

[gtr33m]

Just a bit more info:

zmcontrol status gives

	antispam                Running
	antivirus               Running
	ldap                    Running
	logger                  Stopped
		logmysql.server is not running
		zmlogswatchctl is not running
	mailbox                 Stopped
		mysql.server is not running
	mta                     Running
	snmp                    Running
	spell                   Running
	stats                   Stopped

[uxbod]

Your DNS is not quite right by the looks of your /etc/hosts file aswell. Please post the following

cat /etc/hosts
cat /etc/resolv.conf
dig yourdomain mx
dig yourdomain any
host `hostname` <- note backticks and not single quotes

I presume you took a backup before the upgrade ?

[gtr33m]

Yes and no on the backup. My automatic backup took one from a day ago, but the tape wasn't changed over the day before so I don't have an immediate backup. Stupid of me I know, but I'd like to get it working if possible without using the day old backup.

etc/hosts

127.0.0.1	localhost.localdomain	localhost
192.168.2.5	server1.medalist.com.au	server1
192.168.2.5	mail.medalist.com.au server1

# The following lines are desirable for IPv6 capable hosts
::1     ip6-localhost ip6-loopback
fe00::0 ip6-localnet
ff00::0 ip6-mcastprefix
ff02::1 ip6-allnodes
ff02::2 ip6-allrouters
ff02::3 ip6-allhosts

cat /etc/resolv.conf

nameserver 192.168.2.5
nameserver 192.168.2.1
nameserver 192.168.0.4

dig medalist.com.au mx

; <<>> DiG 9.4.2-P2 <<>> medalist.com.au mx
;; global options:  printcmd
;; Got answer:
;; ->>HEADER<<- opcode: QUERY, status: NOERROR, id: 16113
;; flags: qr aa rd ra; QUERY: 1, ANSWER: 1, AUTHORITY: 1, ADDITIONAL: 0

;; QUESTION SECTION:
;medalist.com.au.		IN	MX

;; ANSWER SECTION:
medalist.com.au.	604800	IN	MX	10 mail.medalist.com.au.

;; AUTHORITY SECTION:
medalist.com.au.	604800	IN	NS	192.168.2.5.medalist.com.au.

;; Query time: 0 msec
;; SERVER: 192.168.2.5#53(192.168.2.5)
;; WHEN: Wed Nov 12 20:44:37 2008
;; MSG SIZE  rcvd: 80

dig medalist.com.au any

; <<>> DiG 9.4.2-P2 <<>> medalist.com.au any
;; global options:  printcmd
;; Got answer:
;; ->>HEADER<<- opcode: QUERY, status: NOERROR, id: 39446
;; flags: qr aa rd ra; QUERY: 1, ANSWER: 5, AUTHORITY: 0, ADDITIONAL: 0

;; QUESTION SECTION:
;medalist.com.au.		IN	ANY

;; ANSWER SECTION:
medalist.com.au.	604800	IN	MX	10 mail.medalist.com.au.
medalist.com.au.	604800	IN	AAAA	::1
medalist.com.au.	604800	IN	SOA	server1.medalist.com.au. server.medalist.com.au. 3 604800 86400 2419200 604800
medalist.com.au.	604800	IN	NS	192.168.2.5.medalist.com.au.
medalist.com.au.	604800	IN	A	192.168.2.5

;; Query time: 0 msec
;; SERVER: 192.168.2.5#53(192.168.2.5)
;; WHEN: Wed Nov 12 20:43:42 2008
;; MSG SIZE  rcvd: 175

host `hostname`

server1.medalist.com.au has address 192.168.2.5

Thanks for the help!

[gtr33m]

I've found a post with the exact same problem which has been solved, but the info about the solution is a bit cryptic and not complete. Can anyone elaborate a bit?

mysql.server Not Running

The solution provided was:

Zimbra support performed the following fixes. The basic issue was an out-of-sync sql database.

1. Modified the /opt/zimbra/my.cnf file to restore following values.
innodb_buffer_pool_size = 1024000000
innodb_flush_method = O_DIRECT

2. Manually set the db.version to 53 which was 52 earlier. May be you put an older directory /opt/zimbra/db/data

3. Also turned off imapproxy which is not necessary in your single server installation.

I'm sorry I cannot be more specific as this was all the info. provided.

[gtr33m]

After hours of reading and trying just about everything, I have managed to get the upgrade completed and am up and running without loss of information.

The root cause of the initial problem was an error during the upgrade process which, when the upgrade was run again without fixing the problem replaced the config.save with a default, mostly blank one.

This was fixed by running the install again, then before accepting the licence copying an old config.save over the one created in /opt/zimbra/.saveconfig/config.save. It's important to use one from the version you are upgrading from. They are located in /opt/zimbra/.saveconfig//<#>

The next issue seems to indeed be a /etc/hosts problem, but I can't see where my problem lies. To get around this, I modified the /opt/zimbra/conf/my.logger.cnf and /opt/zimbra/conf/my.cnf so that the bind address pointed to the network address and not 'localhost'

I then re-ran the install script which was able complete the upgrade which completed the database upgrade as well.

I suspect that this is not the best option and that the bind address may get wiped at the next upgrade, so if anyone know what's wrong with my etc/hosts file I would be thankful for the help.

Regards,

Mark