Sorry for the late reply.
Here is the content of the .err file:
080528 13:44:11 mysqld ended
080528 13:59:36 mysqld started
080528 13:59:37 InnoDB: Started; log sequence number 0 43655
080528 13:59:37 [Note] /opt/zimbra/logger/mysql/libexec/mysqld: ready for connections.
Version: '5.0.51a-log' socket: '/opt/zimbra/logger/db/mysql.sock' port: 7307 Source distribution
A mysqld process already exists at Wed May 28 13:59:48 EST 2008
A mysqld process already exists at Wed May 28 14:01:52 EST 2008
080528 14:02:42 [Note] /opt/zimbra/logger/mysql/libexec/mysqld: Normal shutdown
080528 14:02:42 InnoDB: Starting shutdown...
080528 14:02:43 InnoDB: Shutdown completed; log sequence number 0 43655
080528 14:02:43 [Note] /opt/zimbra/logger/mysql/libexec/mysqld: Shutdown complete
080528 14:02:43 mysqld ended
The zsetup log is the one I posted, and the install log is as follow:
Code:
COMMAND: zmlocalconfig -s | sed -e "s/ = \(.*\)/=\'\1\'/" > /opt/zimbra/.saveconfig/config.save
COMMAND: zmschedulebackup -s > /opt/zimbra/.saveconfig/backup.save
ERROR: service.FAILURE (system failure: ZimbraLdapContext) (cause: javax.naming.CommunicationException zimbra-ldap.internal.domain.au:389)
COMMAND: zmcontrol shutdown
Host zimbra-ldap.internal.domain.au
Stopping stats...Done
Stopping spell...Done
Stopping snmp...Done
Stopping archiving...Done
Stopping antivirus...Done
Stopping antispam...Done
Stopping imapproxy...Done
Stopping logger...Done
Stopping ldap...Done
Preparing packages for installation...
zimbra-core-5.0.6_GA_2313.RHEL5_64-20080522105815
mkdir: cannot create directory `/opt/zimbra/ssl': File exists
mkdir: cannot create directory `/opt/zimbra/.ssh': File exists
mkdir: cannot create directory `/opt/zimbra/zmstat': File exists
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: cannot access `/opt/zimbra/snmp/var': No such file or directory
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: cannot access `/opt/zimbra/openldap/etc': No such file or directory
chown: cannot access `/opt/zimbra/openldap/var': No such file or directory
chmod: missing operand after `755'
Try `chmod --help' for more information.
Preparing packages for installation...
zimbra-ldap-5.0.6_GA_2313.RHEL5_64-20080522105815
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: cannot access `/opt/zimbra/snmp/var': No such file or directory
Preparing packages for installation...
zimbra-logger-5.0.6_GA_2313.RHEL5_64-20080522105815
chown: missing operand after `root:root'
Try `chown --help' for more information.
chown: cannot access `/opt/zimbra/snmp/var': No such file or directory
Preparing packages for installation...
zimbra-snmp-5.0.6_GA_2313.RHEL5_64-20080522105815
COMMAND: zmlocalconfig -f -e av_notify_user='admin@trainees.domain.au'
COMMAND: zmlocalconfig -f -e calendar_allow_null_organizer_with_attendees='false'
COMMAND: zmlocalconfig -f -e calendar_cache_directory='${zimbra_home}/store/calcache'
COMMAND: zmlocalconfig -f -e calendar_cache_enabled='false'
COMMAND: zmlocalconfig -f -e calendar_cache_lru_size='1000'
COMMAND: zmlocalconfig -f -e calendar_cache_range_month_from='0'
COMMAND: zmlocalconfig -f -e calendar_cache_range_months='3'
COMMAND: zmlocalconfig -f -e calendar_canonical_tzid='windows'
COMMAND: zmlocalconfig -f -e calendar_entourage_compatible_timezones='true'
COMMAND: zmlocalconfig -f -e calendar_ics_import_full_parse_max_size='131072'
COMMAND: zmlocalconfig -f -e calendar_outlook_compatible_allday_events='true'
COMMAND: zmlocalconfig -f -e data_source_fetch_size='5'
COMMAND: zmlocalconfig -f -e data_source_max_message_memory_size='2097152'
COMMAND: zmlocalconfig -f -e data_source_new_sync='false'
COMMAND: zmlocalconfig -f -e data_source_trust_self_signed_certs='false'
COMMAND: zmlocalconfig -f -e debug_batch_message_indexing='0'
COMMAND: zmlocalconfig -f -e debug_mailboxindex_use_new_locking='true'
COMMAND: zmlocalconfig -f -e debug_update_config_use_old_scheme='false'
COMMAND: zmlocalconfig -f -e debug_xmpp_disable_client_tls='0'
COMMAND: zmlocalconfig -f -e im_dnsutil_dnsoverride=''
COMMAND: zmlocalconfig -f -e javamail_imap_debug='false'
COMMAND: zmlocalconfig -f -e javamail_imap_enable_starttls='true'
COMMAND: zmlocalconfig -f -e javamail_imap_timeout='60'
COMMAND: zmlocalconfig -f -e javamail_pop3_debug='false'
COMMAND: zmlocalconfig -f -e javamail_pop3_enable_starttls='true'
COMMAND: zmlocalconfig -f -e javamail_pop3_timeout='60'
COMMAND: zmlocalconfig -f -e javamail_smtp_debug='false'
COMMAND: zmlocalconfig -f -e javamail_smtp_enable_starttls='true'
COMMAND: zmlocalconfig -f -e javamail_smtp_timeout='60'
COMMAND: zmlocalconfig -f -e krb5_debug_enabled='false'
COMMAND: zmlocalconfig -f -e krb5_keytab='${zimbra_home}/conf/krb5.keytab'
COMMAND: zmlocalconfig -f -e ldap_amavis_password='*******'
COMMAND: zmlocalconfig -f -e ldap_cache_account_maxage='15'
COMMAND: zmlocalconfig -f -e ldap_cache_account_maxsize='20000'
COMMAND: zmlocalconfig -f -e ldap_cache_cos_maxage='15'
COMMAND: zmlocalconfig -f -e ldap_cache_cos_maxsize='100'
COMMAND: zmlocalconfig -f -e ldap_cache_domain_maxage='15'
COMMAND: zmlocalconfig -f -e ldap_cache_domain_maxsize='100'
COMMAND: zmlocalconfig -f -e ldap_cache_server_maxage='15'
COMMAND: zmlocalconfig -f -e ldap_cache_server_maxsize='100'
COMMAND: zmlocalconfig -f -e ldap_cache_timezone_maxsize='100'
COMMAND: zmlocalconfig -f -e ldap_cache_zimlet_maxage='15'
COMMAND: zmlocalconfig -f -e ldap_cache_zimlet_maxsize='100'
COMMAND: zmlocalconfig -f -e ldap_connect_pool_debug='false'
COMMAND: zmlocalconfig -f -e ldap_connect_pool_initsize='1'
COMMAND: zmlocalconfig -f -e ldap_connect_pool_master='false'
COMMAND: zmlocalconfig -f -e ldap_connect_pool_maxsize='50'
COMMAND: zmlocalconfig -f -e ldap_connect_pool_prefsize='0'
COMMAND: zmlocalconfig -f -e ldap_connect_pool_timeout='120000'
COMMAND: zmlocalconfig -f -e ldap_connect_timeout='30000'
COMMAND: zmlocalconfig -f -e ldap_deref_aliases='always'
COMMAND: zmlocalconfig -f -e ldap_host='zimbra-ldap.internal.domain.au'
COMMAND: zmlocalconfig -f -e ldap_is_master='true'
COMMAND: zmlocalconfig -f -e ldap_log_level='32768'
COMMAND: zmlocalconfig -f -e ldap_master_url='ldap://zimbra-ldap.internal.domain.au:389'
COMMAND: zmlocalconfig -f -e ldap_port='389'
COMMAND: zmlocalconfig -f -e ldap_postfix_password='*******'
COMMAND: zmlocalconfig -f -e ldap_read_timeout='30000'
COMMAND: zmlocalconfig -f -e ldap_replication_password='******'
COMMAND: zmlocalconfig -f -e ldap_require_tls='false'
COMMAND: zmlocalconfig -f -e ldap_root_password='******'
COMMAND: zmlocalconfig -f -e ldap_starttls_supported='1'
COMMAND: zmlocalconfig -f -e ldap_url='ldap://zimbra-ldap.internal.domain.au:389'
COMMAND: zmlocalconfig -f -e localized_client_msgs_directory='${mailboxd_directory}/webapps/zimbra/WEB-INF/classes/messages'
COMMAND: zmlocalconfig -f -e localized_msgs_directory='${zimbra_home}/conf/msgs'
COMMAND: zmlocalconfig -f -e logger_mysql_bind_address='localhost'
COMMAND: zmlocalconfig -f -e logger_mysql_data_directory='${zimbra_home}/logger/db/data'
COMMAND: zmlocalconfig -f -e logger_mysql_directory='${zimbra_home}/logger/mysql'
COMMAND: zmlocalconfig -f -e logger_mysql_mycnf='${zimbra_home}/conf/my.logger.cnf'
COMMAND: zmlocalconfig -f -e logger_mysql_pidfile='${zimbra_home}/logger/db/mysql.pid'
COMMAND: zmlocalconfig -f -e logger_mysql_port='7307'
COMMAND: zmlocalconfig -f -e logger_mysql_socket='${zimbra_home}/logger/db/mysql.sock'
COMMAND: zmlocalconfig -f -e mailboxd_directory='/opt/zimbra/mailboxd'
COMMAND: zmlocalconfig -f -e mailboxd_java_heap_memory_percent='40'
COMMAND: zmlocalconfig -f -e mailboxd_java_home='${zimbra_java_home}'
COMMAND: zmlocalconfig -f -e mailboxd_java_options='-client -XX:NewRatio=2 -Djava.awt.headless=true -XX:MaxPermSize=128m -XX:SoftRefLRUPolicyMSPerMB=1'
COMMAND: zmlocalconfig -f -e mailboxd_keystore='/opt/zimbra/conf/keystore'
COMMAND: zmlocalconfig -f -e mailboxd_keystore_password='4fAo6jnrJe'
COMMAND: zmlocalconfig -f -e mailboxd_output_file='${zimbra_log_directory}/zmmailboxd.out'
COMMAND: zmlocalconfig -f -e mailboxd_output_rotate_interval='86400'
COMMAND: zmlocalconfig -f -e mailboxd_pidfile='${zimbra_log_directory}/mailboxd.pid'
COMMAND: zmlocalconfig -f -e mailboxd_server=''
COMMAND: zmlocalconfig -f -e mailboxd_thread_stack_size='256k'
COMMAND: zmlocalconfig -f -e mailboxd_truststore='/opt/zimbra/java/jre/lib/security/cacerts'
COMMAND: zmlocalconfig -f -e mailboxd_truststore_password='changeit'
COMMAND: zmlocalconfig -f -e mysql_bind_address='localhost'
COMMAND: zmlocalconfig -f -e mysql_data_directory='${zimbra_db_directory}/data'
COMMAND: zmlocalconfig -f -e mysql_directory='${zimbra_home}/mysql'
COMMAND: zmlocalconfig -f -e mysql_innodb_log_buffer_size='8388608'
COMMAND: zmlocalconfig -f -e mysql_innodb_log_file_size='104857600'
COMMAND: zmlocalconfig -f -e mysql_logger_root_password='******'
COMMAND: zmlocalconfig -f -e mysql_memory_percent='30'
COMMAND: zmlocalconfig -f -e mysql_mycnf='${zimbra_home}/conf/my.cnf'
COMMAND: zmlocalconfig -f -e mysql_pidfile='${zimbra_db_directory}/mysql.pid'
COMMAND: zmlocalconfig -f -e mysql_port='7306'
COMMAND: zmlocalconfig -f -e mysql_read_buffer_size='1048576'
COMMAND: zmlocalconfig -f -e mysql_root_password='zimbra'
COMMAND: zmlocalconfig -f -e mysql_socket='${zimbra_db_directory}/mysql.sock'
COMMAND: zmlocalconfig -f -e mysql_sort_buffer_size='1048576'
COMMAND: zmlocalconfig -f -e mysql_table_cache='500'
COMMAND: zmlocalconfig -f -e nio_debug_enabled='false'
COMMAND: zmlocalconfig -f -e nio_enabled='false'
COMMAND: zmlocalconfig -f -e nio_imap_enabled='false'
COMMAND: zmlocalconfig -f -e nio_imap_log_buffers='false'
COMMAND: zmlocalconfig -f -e nio_lmtp_enabled='false'
COMMAND: zmlocalconfig -f -e nio_pop3_enabled='false'
COMMAND: zmlocalconfig -f -e postfix_alias_maps='hash:/etc/aliases'
COMMAND: zmlocalconfig -f -e postfix_broken_sasl_auth_clients='yes'
COMMAND: zmlocalconfig -f -e postfix_command_directory='${zimbra_home}/postfix-${postfix_version}/sbin'
COMMAND: zmlocalconfig -f -e postfix_daemon_directory='${zimbra_home}/postfix-${postfix_version}/libexec'
COMMAND: zmlocalconfig -f -e postfix_header_checks='pcre:${zimbra_home}/conf/postfix_header_checks'
COMMAND: zmlocalconfig -f -e postfix_in_flow_delay='1s'
COMMAND: zmlocalconfig -f -e postfix_lmtp_connection_cache_destinations=''
COMMAND: zmlocalconfig -f -e postfix_lmtp_connection_cache_time_limit='4s'
COMMAND: zmlocalconfig -f -e postfix_mailq_path='${zimbra_home}/postfix-${postfix_version}/sbin/mailq'
COMMAND: zmlocalconfig -f -e postfix_manpage_directory='${zimbra_home}/postfix-${postfix_version}/man'
COMMAND: zmlocalconfig -f -e postfix_maximal_backoff_time='4000s'
COMMAND: zmlocalconfig -f -e postfix_minimal_backoff_time='300s'
COMMAND: zmlocalconfig -f -e postfix_newaliases_path='${zimbra_home}/postfix-${postfix_version}/sbin/newaliases'
COMMAND: zmlocalconfig -f -e postfix_queue_directory='${zimbra_home}/postfix-${postfix_version}/spool'
COMMAND: zmlocalconfig -f -e postfix_queue_run_delay='300s'
COMMAND: zmlocalconfig -f -e postfix_sender_canonical_maps='ldap:${zimbra_home}/conf/ldap-scm.cf'
COMMAND: zmlocalconfig -f -e postfix_sendmail_path='${zimbra_home}/postfix-${postfix_version}/sbin/sendmail'
COMMAND: zmlocalconfig -f -e postfix_smtpd_client_restrictions='reject_unauth_pipelining'
COMMAND: zmlocalconfig -f -e postfix_smtpd_data_restrictions='reject_unauth_pipelining'
COMMAND: zmlocalconfig -f -e postfix_smtpd_helo_required='yes'
COMMAND: zmlocalconfig -f -e postfix_smtpd_tls_cert_file='${zimbra_home}/conf/smtpd.crt'
COMMAND: zmlocalconfig -f -e postfix_smtpd_tls_key_file='${zimbra_home}/conf/smtpd.key'
COMMAND: zmlocalconfig -f -e postfix_smtpd_tls_loglevel='1'
COMMAND: zmlocalconfig -f -e postfix_transport_maps='ldap:${zimbra_home}/conf/ldap-transport.cf'
COMMAND: zmlocalconfig -f -e postfix_version='2.4.3.4z'
COMMAND: zmlocalconfig -f -e postfix_virtual_alias_domains='ldap:${zimbra_home}/conf/ldap-vad.cf'
COMMAND: zmlocalconfig -f -e postfix_virtual_alias_maps='ldap:${zimbra_home}/conf/ldap-vam.cf'
COMMAND: zmlocalconfig -f -e postfix_virtual_mailbox_domains='ldap:${zimbra_home}/conf/ldap-vmd.cf'
COMMAND: zmlocalconfig -f -e postfix_virtual_mailbox_maps='ldap:${zimbra_home}/conf/ldap-vmm.cf'
COMMAND: zmlocalconfig -f -e postfix_virtual_transport='error'
COMMAND: zmlocalconfig -f -e search_dbfirst_term_percentage_cutoff='0.8'
COMMAND: zmlocalconfig -f -e search_disable_database_hints='false'
COMMAND: zmlocalconfig -f -e skins_directory='${mailboxd_directory}/webapps/zimbra/skins'
COMMAND: zmlocalconfig -f -e smtp_destination='admin@trainees.domain.au'
COMMAND: zmlocalconfig -f -e smtp_notify='yes'
COMMAND: zmlocalconfig -f -e smtp_source='admin@trainees.domain.au'
COMMAND: zmlocalconfig -f -e snmp_notify='yes'
COMMAND: zmlocalconfig -f -e snmp_trap_host='zimbra-ldap.internal.domain.au'
COMMAND: zmlocalconfig -f -e ssl_allow_untrusted_certs='TRUE'
COMMAND: zmlocalconfig -f -e stats_img_folder='${zimbra_home}/logger/db/work'
COMMAND: zmlocalconfig -f -e timezone_file='${zimbra_home}/conf/timezones.ics'
COMMAND: zmlocalconfig -f -e wiki_enabled='false'
COMMAND: zmlocalconfig -f -e wiki_user='wiki'
COMMAND: zmlocalconfig -f -e zimbra_admin_service_port='7071'
COMMAND: zmlocalconfig -f -e zimbra_admin_service_scheme='https://'
COMMAND: zmlocalconfig -f -e zimbra_admin_waitset_default_request_timeout='300'
COMMAND: zmlocalconfig -f -e zimbra_admin_waitset_max_request_timeout='3600'
COMMAND: zmlocalconfig -f -e zimbra_admin_waitset_min_request_timeout='0'
COMMAND: zmlocalconfig -f -e zimbra_attrs_directory='${zimbra_home}/conf/attrs'
COMMAND: zmlocalconfig -f -e zimbra_auth_always_send_refer='false'
COMMAND: zmlocalconfig -f -e zimbra_auth_provider='zimbra'
COMMAND: zmlocalconfig -f -e zimbra_blob_input_stream_buffer_size_kb='1'
[snip]
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_nobatch_min_merge='10'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_nobatch_ram_buffer_size_kb='10240'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_nobatch_use_compound_file='true'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_nobatch_use_doc_scheduler='true'
COMMAND: zmlocalconfig -f -e zimbra_index_lucene_nobatch_use_serial_merge_scheduler='true'
COMMAND: zmlocalconfig -f -e zimbra_index_max_transaction_bytes='1000000'
COMMAND: zmlocalconfig -f -e zimbra_index_max_transaction_items='100'
COMMAND: zmlocalconfig -f -e zimbra_index_max_uncommitted_operations='200'
COMMAND: zmlocalconfig -f -e zimbra_index_reader_idle_flush_time='300'
COMMAND: zmlocalconfig -f -e zimbra_index_reader_idle_sweep_frequency='30'
COMMAND: zmlocalconfig -f -e zimbra_index_reader_lru_size='20'
COMMAND: zmlocalconfig -f -e zimbra_index_sweep_frequency='30'
COMMAND: zmlocalconfig -f -e zimbra_index_use_nfs_deletion_policy='false'
COMMAND: zmlocalconfig -f -e zimbra_index_use_reader_reopen='false'
COMMAND: zmlocalconfig -f -e zimbra_java_home='/opt/zimbra/java'
COMMAND: zmlocalconfig -f -e zimbra_ldap_password='**********'
COMMAND: zmlocalconfig -f -e zimbra_ldap_user='zimbra'
COMMAND: zmlocalconfig -f -e zimbra_ldap_userdn='uid=zimbra,cn=admins,cn=zimbra'
COMMAND: zmlocalconfig -f -e zimbra_log4j_properties='${zimbra_home}/conf/log4j.properties'
COMMAND: zmlocalconfig -f -e zimbra_log_directory='${zimbra_home}/log'
COMMAND: zmlocalconfig -f -e zimbra_logger_mysql_password='*******'
COMMAND: zmlocalconfig -f -e zimbra_mailbox_active_cache='500'
COMMAND: zmlocalconfig -f -e zimbra_mailbox_change_checkpoint_frequency='100'
COMMAND: zmlocalconfig -f -e zimbra_mailbox_groups='100'
COMMAND: zmlocalconfig -f -e zimbra_mailbox_inactive_cache='30'
COMMAND: zmlocalconfig -f -e zimbra_mailbox_manager_hardref_cache='2500'
COMMAND: zmlocalconfig -f -e zimbra_mailbox_purgeable='true'
COMMAND: zmlocalconfig -f -e zimbra_mtareport_max_recipients='50'
COMMAND: zmlocalconfig -f -e zimbra_mtareport_max_senders='50'
COMMAND: zmlocalconfig -f -e zimbra_mysql_password='zimbra'
COMMAND: zmlocalconfig -f -e zimbra_mysql_user='zimbra'
COMMAND: zmlocalconfig -f -e zimbra_nio_file_copy_chunk_size_kb='512'
COMMAND: zmlocalconfig -f -e zimbra_noop_default_timeout='300'
COMMAND: zmlocalconfig -f -e zimbra_noop_max_timeout='1200'
COMMAND: zmlocalconfig -f -e zimbra_noop_min_timeout='30'
COMMAND: zmlocalconfig -f -e zimbra_require_interprocess_security='1'
COMMAND: zmlocalconfig -f -e zimbra_server_hostname='zimbra-ldap.internal.domain.au'
COMMAND: zmlocalconfig -f -e zimbra_session_limit_imap='5'
COMMAND: zmlocalconfig -f -e zimbra_session_max_pending_notifications='400'
COMMAND: zmlocalconfig -f -e zimbra_session_timeout_soap='600'
COMMAND: zmlocalconfig -f -e zimbra_spam_report_queue_size='100'
COMMAND: zmlocalconfig -f -e zimbra_ssl_enabled='true'
COMMAND: zmlocalconfig -f -e zimbra_store_copy_buffer_size_kb='16'
COMMAND: zmlocalconfig -f -e zimbra_store_directory='${zimbra_home}/store'
COMMAND: zmlocalconfig -f -e zimbra_store_sweeper_max_age='480'
COMMAND: zmlocalconfig -f -e zimbra_throttle_op_concurrency='1000,1000,1000,1000,1000'
COMMAND: zmlocalconfig -f -e zimbra_tmp_directory='/tmp/zimbra'
COMMAND: zmlocalconfig -f -e zimbra_uid='500'
COMMAND: zmlocalconfig -f -e zimbra_user='zimbra'
COMMAND: zmlocalconfig -f -e zimbra_waitset_default_request_timeout='300'
COMMAND: zmlocalconfig -f -e zimbra_waitset_initial_sleep_time='1'
COMMAND: zmlocalconfig -f -e zimbra_waitset_max_per_account='5'
COMMAND: zmlocalconfig -f -e zimbra_waitset_max_request_timeout='1200'
COMMAND: zmlocalconfig -f -e zimbra_waitset_min_request_timeout='30'
COMMAND: zmlocalconfig -f -e zimbra_waitset_nodata_sleep_time='3'
COMMAND: zmlocalconfig -f -e zimbra_zmprov_default_soap_server='localhost'
COMMAND: zmlocalconfig -f -e zimbra_zmprov_default_to_ldap='TRUE'
COMMAND: zmlocalconfig -f -e zimlet_directory='${mailboxd_directory}/webapps/service/zimlet'
COMMAND: zmlocalconfig -f -e zmstat_interval='30'
COMMAND: zmlocalconfig -f -e zmstat_log_directory='${zimbra_home}/zmstat'
COMMAND: cat /opt/zimbra/.saveconfig/backup.save | xargs zmschedulebackup -R
ERROR: service.FAILURE (system failure: ZimbraLdapContext) (cause: javax.naming.CommunicationException zimbra-ldap.internal.domain.au:389)
Default schedule set
Current Schedule:
d 1m 0 0 * * *
Would it be something related to the fact my server is named zimbra-ldap.internal.domain.au while the main domain is trainees.domain.au ?