Hi all,

First of all, I'm newbie and appologize if there is already a related topic about.
Here is my problem in few words. I did a rsync of my old zimbra server to a shared media, made a new install of zimbra, and rsync the shared media with the new install. Everything seemed well when I did a zmcontrol start but, I'm facing an issue with zmmailboxdctl which is not running.

For further details, you can take a look at the output of mailbox.log and zmmailboxd.out.

mailbox.log

2013-06-26 15:03:30,319 INFO [main] [] soap - Servlet SoapServlet starting up
2013-06-26 15:03:30,354 INFO [main] [] soap - Adding service AccountService to SoapServlet
2013-06-26 15:03:30,409 INFO [main] [] soap - Adding service MailService to SoapServlet
2013-06-26 15:03:30,523 INFO [main] [] soap - Adding service IMService to SoapServlet
2013-06-26 15:03:30,531 INFO [main] [] misc - version=6.0.16_GA_2998 release=20120404131639 builddate=20120404-1320 buildhost=zre-rhel5.eng.vmware.com
2013-06-26 15:03:30,532 INFO [main] [] misc - LANG environment is set to: C
2013-06-26 15:03:30,532 INFO [main] [] misc - System property java.home=/opt/zimbra/jdk1.6.0_31/jre
2013-06-26 15:03:30,532 INFO [main] [] misc - System property java.runtime.version=1.6.0_31-b04
2013-06-26 15:03:30,532 INFO [main] [] misc - System property java.version=1.6.0_31
2013-06-26 15:03:30,532 INFO [main] [] misc - System property java.vm.info=mixed mode
2013-06-26 15:03:30,533 INFO [main] [] misc - System property java.vm.name=Java HotSpot(TM) Server VM
2013-06-26 15:03:30,533 INFO [main] [] misc - System property java.vm.version=20.6-b01
2013-06-26 15:03:30,533 INFO [main] [] misc - System property os.arch=i386
2013-06-26 15:03:30,533 INFO [main] [] misc - System property os.name=Linux
2013-06-26 15:03:30,533 INFO [main] [] misc - System property os.version=2.6.18-8.el5
2013-06-26 15:03:30,533 INFO [main] [] misc - System property sun.arch.data.model=32
2013-06-26 15:03:30,533 INFO [main] [] misc - System property sun.cpu.endian=little
2013-06-26 15:03:30,533 INFO [main] [] misc - System property sun.cpu.isalist=
2013-06-26 15:03:30,533 INFO [main] [] misc - System property sun.os.patch.level=unknown
2013-06-26 15:03:30,549 INFO [main] [] system - Setting mysql connector property: maxActive=100
2013-06-26 15:03:30,557 INFO [main] [] system - Setting mysql connector property: maxActive=100
2013-06-26 15:03:30,565 INFO [main] [] dbconn - instantiating DB connection factory class com.zimbra.cs.db.ZimbraConnectionFactory
2013-06-26 15:03:30,875 FATAL [main] [] system - Config initialization failed
com.zimbra.common.service.ServiceException: system failure: getting all config entries
ExceptionId:main:1372255410875:46b159fa939526be
Code:service.FAILURE
at com.zimbra.common.service.ServiceException.FAILURE (ServiceException.java:248)
at com.zimbra.cs.db.DbConfig.getAll(DbConfig.java:170 )
at com.zimbra.cs.util.Config.init(Config.java:66)
at com.zimbra.cs.util.Config.initConfig(Config.java:9 2)
at com.zimbra.cs.util.Config.getString(Config.java:10 4)
at com.zimbra.cs.db.Versions.checkDBVersion(Versions. java:66)
.
.
.
Caused by: com.mysql.jdbc.exceptions.MySQLNonTransientConnect ionException: Communications link failure due to underlying exception:

** BEGIN NESTED EXCEPTION **

java.io.EOFException
MESSAGE: Can not read response from server. Expected to read 4 bytes, read 0 bytes before connection was unexpectedly lost.

STACKTRACE:

java.io.EOFException: Can not read response from server. Expected to read 4 bytes, read 0 bytes before connection was unexpectedly lost.
at com.mysql.jdbc.MysqlIO.readFully(MysqlIO.java:1997 )
at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO. java:2411)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.ja va:2916)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:16 31)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java :1723)
at com.mysql.jdbc.Connection.execSQL(Connection.java: 3283)
.
.
.
at org.mortbay.start.Main.main(Main.java:119)


** END NESTED EXCEPTION **



Last packet sent to the server was 77 ms ago.

Query being executed when exception was thrown:

SELECT * FROM config
at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO. java:2622)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.ja va:2916)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:16 31)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java :1723)
at com.mysql.jdbc.Connection.execSQL(Connection.java: 3283)
at com.mysql.jdbc.PreparedStatement.executeInternal(P reparedStatement.java:1332)
at com.mysql.jdbc.PreparedStatement.executeQuery(Prep aredStatement.java:1467)
at com.zimbra.cs.db.DebugPreparedStatement.executeQue ry(DebugPreparedStatement.java:160)
at org.apache.commons.dbcp.DelegatingPreparedStatemen t.executeQuery(DelegatingPreparedStatement.java:93 )
at com.zimbra.cs.db.DbConfig.getAll(DbConfig.java:164 )
... 41 more
2013-06-26 15:03:33,644 INFO [main] [] soap - Servlet SoapServlet starting up
2013-06-26 15:03:33,671 INFO [main] [] soap - Adding service AccountService to SoapServlet
2013-06-26 15:03:33,729 INFO [main] [] soap - Adding service MailService to SoapServlet
2013-06-26 15:03:33,843 INFO [main] [] soap - Adding service IMService to SoapServlet
2013-06-26 15:03:33,852 INFO [main] [] misc - version=6.0.16_GA_2998 release=20120404131639 builddate=20120404-1320 buildhost=zre-rhel5.eng.vmware.com
2013-06-26 15:03:33,853 INFO [main] [] misc - LANG environment is set to: C
2013-06-26 15:03:33,853 INFO [main] [] misc - System property java.home=/opt/zimbra/jdk1.6.0_31/jre
2013-06-26 15:03:33,853 INFO [main] [] misc - System property java.runtime.version=1.6.0_31-b04
2013-06-26 15:03:33,853 INFO [main] [] misc - System property java.version=1.6.0_31
2013-06-26 15:03:33,853 INFO [main] [] misc - System property java.vm.info=mixed mode
2013-06-26 15:03:33,853 INFO [main] [] misc - System property java.vm.name=Java HotSpot(TM) Server VM
2013-06-26 15:03:33,853 INFO [main] [] misc - System property java.vm.version=20.6-b01
2013-06-26 15:03:33,853 INFO [main] [] misc - System property os.arch=i386
2013-06-26 15:03:33,853 INFO [main] [] misc - System property os.name=Linux
2013-06-26 15:03:33,854 INFO [main] [] misc - System property os.version=2.6.18-8.el5
2013-06-26 15:03:33,854 INFO [main] [] misc - System property sun.arch.data.model=32
2013-06-26 15:03:33,854 INFO [main] [] misc - System property sun.cpu.endian=little
2013-06-26 15:03:33,854 INFO [main] [] misc - System property sun.cpu.isalist=
2013-06-26 15:03:33,854 INFO [main] [] misc - System property sun.os.patch.level=unknown
2013-06-26 15:03:33,872 INFO [main] [] system - Setting mysql connector property: maxActive=100
2013-06-26 15:03:33,879 INFO [main] [] system - Setting mysql connector property: maxActive=100
2013-06-26 15:03:33,887 INFO [main] [] dbconn - instantiating DB connection factory class com.zimbra.cs.db.ZimbraConnectionFactory
2013-06-26 15:03:34,177 FATAL [main] [] system - Config initialization failed
com.zimbra.common.service.ServiceException: system failure: getting all config entries
ExceptionId:main:1372255414168:13b43b33fd118285
Code:service.FAILURE
at com.zimbra.common.service.ServiceException.FAILURE (ServiceException.java:248)
at com.zimbra.cs.db.DbConfig.getAll(DbConfig.java:170 )
at com.zimbra.cs.util.Config.init(Config.java:66)
at com.zimbra.cs.util.Config.initConfig(Config.java:9 2)
at com.zimbra.cs.util.Config.getString(Config.java:10 4)
.
.
at org.mortbay.start.Main.main(Main.java:119)


** END NESTED EXCEPTION **



Last packet sent to the server was 49 ms ago.

Query being executed when exception was thrown:

SELECT * FROM config
at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO. java:2622)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.ja va:2916)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:16 31)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java :1723)
at com.mysql.jdbc.Connection.execSQL(Connection.java: 3283)
at com.mysql.jdbc.PreparedStatement.executeInternal(P reparedStatement.java:1332)
at com.mysql.jdbc.PreparedStatement.executeQuery(Prep aredStatement.java:1467)
at com.zimbra.cs.db.DebugPreparedStatement.executeQue ry(DebugPreparedStatement.java:160)
at org.apache.commons.dbcp.DelegatingPreparedStatemen t.executeQuery(DelegatingPreparedStatement.java:93 )
at com.zimbra.cs.db.DbConfig.getAll(DbConfig.java:164 )
... 41 more

zmmailboxd.out
880 INFO [main] log - Setting umask=027
880 INFO [main] log - Current rlimit_nofiles (soft=524288, hard=524288)
880 INFO [main] log - Set rlimit_nofiles (soft=65536, hard=65536)
881 INFO [main] log - Setting GID=501
881 INFO [main] log - Setting UID=501
882 INFO [main] log - jetty-6.1.22.z6
1023 INFO [main] log - No Transaction manager found - if your webapp requires one, please configure one.
### Excluding compile: org.apache.xerces.impl.XMLDocumentFragmentScannerI mpl$FragmentContentDispatcher::dispatch
Total time for which application threads were stopped: 0.0004530 seconds
Zimbra server process is running as uid=501 euid=501 gid=501 egid=501
Heap
par new generation total 286656K, used 66860K [0x5e020000, 0x71720000, 0x71720000)
eden space 254848K, 26% used [0x5e020000, 0x6216b0b8, 0x6d900000)
from space 31808K, 0% used [0x6d900000, 0x6d900000, 0x6f810000)
to space 31808K, 0% used [0x6f810000, 0x6f810000, 0x71720000)
concurrent mark-sweep generation total 958464K, used 0K [0x71720000, 0xabf20000, 0xac020000)
concurrent-mark-sweep perm gen total 131072K, used 17209K [0xac020000, 0xb4020000, 0xb4020000)
CompilerOracle: exclude com/zimbra/cs/session/SessionMap.putAndPrune
CompilerOracle: exclude com/zimbra/cs/mailbox/MailItem.delete
CompilerOracle: exclude org/apache/xerces/impl/XMLDocumentFragmentScannerImpl$FragmentContentDisp atcher.dispatch
0 INFO [main] log - Logging to org.slf4j.impl.Log4jLoggerAdapter(org.mortbay.log) via org.mortbay.log.Slf4jLog
Total time for which application threads were stopped: 0.0001160 seconds
Total time for which application threads were stopped: 0.0001040 seconds
Zimbra server reserving server socket port=110 bindaddr=195.x.x.x ssl=false
Zimbra server reserving server socket port=995 bindaddr=null ssl=true
Zimbra server reserving server socket port=143 bindaddr=null ssl=false
Zimbra server reserving server socket port=993 bindaddr=null ssl=true
Zimbra server reserving server socket port=7025 bindaddr=null ssl=false
964 INFO [main] log - Setting umask=027
966 INFO [main] log - Current rlimit_nofiles (soft=524288, hard=524288)
966 INFO [main] log - Set rlimit_nofiles (soft=65536, hard=65536)
966 INFO [main] log - Setting GID=501
968 INFO [main] log - Setting UID=501
969 INFO [main] log - jetty-6.1.22.z6
1099 INFO [main] log - No Transaction manager found - if your webapp requires one, please configure one.
### Excluding compile: org.apache.xerces.impl.XMLDocumentFragmentScannerI mpl$FragmentContentDispatcher::dispatch
Total time for which application threads were stopped: 0.0012050 seconds
Total time for which application threads were stopped: 0.0003930 seconds
Zimbra server process is running as uid=501 euid=501 gid=501 egid=501
Heap
par new generation total 286656K, used 66861K [0x5dfb0000, 0x716b0000, 0x716b0000)
eden space 254848K, 26% used [0x5dfb0000, 0x620fb4f0, 0x6d890000)
from space 31808K, 0% used [0x6d890000, 0x6d890000, 0x6f7a0000)
to space 31808K, 0% used [0x6f7a0000, 0x6f7a0000, 0x716b0000)
concurrent mark-sweep generation total 958464K, used 0K [0x716b0000, 0xabeb0000, 0xabfb0000)
concurrent-mark-sweep perm gen total 131072K, used 17208K [0xabfb0000, 0xb3fb0000, 0xb3fb0000)


Give you a thank in advance.

zcs 6.0.16_GA_2998.RHEL5_20120404131639 / RHEL5 FOSS edition / 3Go RAM /Intel(R) Xeon(R) CPU E5335 @ 2.00GHz