After some bile-inducing moments, I managed to do an install with fewer errors. Part of the install dialogue is like so:
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Initializing Documents...failed to initialize documents...see logfile for details.
Restarting tomcat...Done
Operations logged to /tmp/zmsetup.log.12148
Restoring existing configuration file from /opt/zimbra/.saveconfig/config.save...done
Operations logged to /tmp/zmsetup.log.12148
Setting defaults...Setting defaults from existing config...Done
Checking for port conflicts
Starting ldap...Done
Setting defaults from ldap...Done
Saving config in /opt/zimbra/config.12148...Done
Operations logged to /tmp/zmsetup.log.12148
Setting local config values...Done
Stopping ldap...done
Starting ldap...Done
Saving CA in ldap...Done
Installing SSL certificate...Done
Creating server entry for XXXXX.or.ke...Done
Setting spell check URL...Done
Setting service ports on XXXXX.or.ke...Done
Adding XXXXX.or.ke to zimbraMailHostPool in default COS...Done
Installing skins...
sky
harvest
lavender
froggy
rose
vanilla
steel
bare
sand
Done
Setting Keyboard Shortcut Preferences...done.
Setting MTA auth host...Done
Creating user
spam.ztyskqxycp@XXXXX.or.ke...Done
Creating user
ham.os4m7sjsr@XXXXX.or.ke...Done
Setting spam training accounts...Done
Initializing mta config...Done
Configuring SNMP...Done
Setting services on XXXXX.or.ke...Done
Setting up zimbra crontab...Done
Setting up syslog.conf...Done
You have the option of notifying Zimbra of your installation.
This helps us to track the uptake of the Zimbra Collaboration Suite.
The only information that will be transmitted is:
The VERSION of zcs installed (4.5.0_GA_612_FC5)
The ADMIN EMAIL ADDRESS created (admin@XXXXX.or.ke)
Notify Zimbra of your installation? [Yes] n
Notification skipped
Starting servers...Done.
Installing zimlets...
com_zimbra_email
com_zimbra_search
com_zimbra_date
com_zimbra_phone
com_zimbra_url
Done
Initializing Documents...failed to initialize documents...see logfile for details.
Restarting tomcat...Done
Operations logged to /tmp/zmsetup.log.12148
Configuration complete - press return to exit
---
As you can see, the documents didn't initialize.
The log file shows:
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Initializing Documents...
Getting ldap default cos attribute zimbraFeatureNotebookEnabled from ldap.
Global config attribute retrieved from ldap: zimbraNotebookAccount=wiki@XXXXX.or.ke
*** Running as zimbra user: /opt/zimbra/bin/zmprov mc default zimbraFeatureNotebookEnabled TRUE
[] INFO: I/O exception (java.net.ConnectException) caught when processing request: Connection refused
[] INFO: Retrying request
[] INFO: I/O exception (java.net.ConnectException) caught when processing request: Connection refused
[] INFO: Retrying request
[] INFO: I/O exception (java.net.ConnectException) caught when processing request: Connection refused
[] INFO: Retrying request
ERROR: zclient.IO_ERROR (invoke Connection refused, server: localhost) (cause: java.net.ConnectException Connection refused)
*** Running as zimbra user: /opt/zimbra/bin/zmprov mcf zimbraNotebookAccount
wiki@XXXXX.or.ke
[] INFO: I/O exception (java.net.ConnectException) caught when processing request: Connection refused
[] INFO: Retrying request
[] INFO: I/O exception (java.net.ConnectException) caught when processing request: Connection refused
[] INFO: Retrying request
[] INFO: I/O exception (java.net.ConnectException) caught when processing request: Connection refused
[] INFO: Retrying request
ERROR: zclient.IO_ERROR (invoke Connection refused, server: localhost) (cause: java.net.ConnectException Connection refused)
*** Running as zimbra user: /opt/zimbra/bin/zmprov in
wiki@XXXXX.or.ke 'hP2Hvpgf' /opt/zimbra/wiki/Template Template
[] INFO: I/O exception (java.net.ConnectException) caught when processing request: Connection refused
[] INFO: Retrying request
[] INFO: I/O exception (java.net.ConnectException) caught when processing request: Connection refused
[] INFO: Retrying request
[] INFO: I/O exception (java.net.ConnectException) caught when processing request: Connection refused
[] INFO: Retrying request
ERROR: zclient.IO_ERROR (invoke Connection refused, server: localhost) (cause: java.net.ConnectException Connection refused)
*** Running as zimbra user: /opt/zimbra/bin/zmprov mc default zimbraFeatureNotebookEnabled FALSE
[] INFO: I/O exception (java.net.ConnectException) caught when processing request: Connection refused
[] INFO: Retrying request
[] INFO: I/O exception (java.net.ConnectException) caught when processing request: Connection refused
[] INFO: Retrying request
[] INFO: I/O exception (java.net.ConnectException) caught when processing request: Connection refused
[] INFO: Retrying request
ERROR: zclient.IO_ERROR (invoke Connection refused, server: localhost) (cause: java.net.ConnectException Connection refused)
failed to initialize documents...see logfile for details.
*** Running as zimbra user: /opt/zimbra/bin/zmprov mc default zimbraFeatureNotebookEnabled TRUE
[] INFO: I/O exception (java.net.ConnectException) caught when processing request: Connection refused
[] INFO: Retrying request
[] INFO: I/O exception (java.net.ConnectException) caught when processing request: Connection refused
[] INFO: Retrying request
[] INFO: I/O exception (java.net.ConnectException) caught when processing request: Connection refused
[] INFO: Retrying request
ERROR: zclient.IO_ERROR (invoke Connection refused, server: localhost) (cause: java.net.ConnectException Connection refused)
---
Checking server status:
---
[root@XXXXX zcs]# su zimbra
[zimbra@XXXXX zcs]$ zmcontrol status
Host XXXXX.or.ke
antispam Running
antivirus Running
ldap Running
logger Running
mailbox Stopped
tomcat is not running
mta Running
snmp Running
spell Running
[zimbra@XXXXX zcs]$ tomcat restart
[zimbra@XXXXX zcs]$ zmcontrol status
Host XXXXX.or.ke
antispam Running
antivirus Running
ldap Running
logger Running
mailbox Running
mta Running
snmp Running
spell Running
[zimbra@XXXXX zcs]$
---
All looks well but the Admin console and user login pages don't load!
After checking status again, the mailbox isn't running and tomcat is stopped.
---
[zimbra@XXXXX zcs]$ zmcontrol status
Host XXXXX.or.ke
antispam Running
antivirus Running
ldap Running
logger Running
mailbox Stopped
tomcat is not running
mta Running
snmp Running
spell Running
[zimbra@XXXXX zcs]$
---
What's going on? Anyone out there, PLEASE!
Bugzilla
Wiki
Source
[SOLVED] Upgrade error zcs 4.5.0_GA 
Linear Mode
