are they permissions correct?
[root@msgctr zimbra]# ls -la
total 252
drwxr-xr-x 44 root root 4096 Dec 2 15:36 .
drwxr-xr-x 6 root root 4096 Dec 2 12:19 ..
drwx------ 8 zimbra zimbra 4096 Dec 1 18:33 amavisd-new-2.4.3
drwx------ 11 root root 4096 Dec 1 18:35 apache-tomcat-5.5.15
drwx------ 8 zimbra zimbra 4096 Dec 1 18:35 aspell-0.60.3
-rw------- 1 root root 9943 Dec 1 11:39 .bash_history
-rw------- 1 root root 24 May 17 2007 .bash_logout
-rw------- 1 root root 232 May 18 2007 .bash_profile
-rw------- 1 root root 1009 May 18 2007 .bashrc
drwx------ 2 root root 4096 Dec 1 18:35 bin
drwx------ 3 zimbra zimbra 4096 Dec 1 18:35 clamav-0.88.7
drwx------ 9 zimbra zimbra 4096 Dec 1 18:35 clamav-0.90.2
drwx------ 9 zimbra zimbra 4096 Dec 1 18:35 clamav-0.91.2
drwx------ 6 zimbra zimbra 4096 Dec 1 18:35 conf
-rw------- 1 zimbra zimbra 1320 May 17 2007 config.10421
-rw------- 1 zimbra zimbra 1201 May 17 2007 config.12687
-rw------- 1 zimbra zimbra 1370 May 21 2007 config.30182
-rw------- 1 zimbra zimbra 1184 May 17 2007 config.5134
drwx------ 2 zimbra zimbra 4096 Dec 1 18:35 contrib
drwx------ 5 zimbra zimbra 4096 Dec 1 18:35 convertd
drwx------ 8 root zimbra 4096 Dec 1 18:35 cyrus-sasl-2.1.21.ZIMBRA
drwx------ 3 zimbra zimbra 4096 Dec 1 18:35 db
drwx------ 2 zimbra zimbra 4096 Dec 1 18:36 doc
drwx------ 7 zimbra zimbra 4096 Dec 1 18:36 dspam-3.6.2
-rw------- 1 root root 383 May 17 2007 .emacs
-rw------- 1 root root 62 May 18 2007 .exrc
-rw------- 1 root root 120 May 17 2007 .gtkrc
drwx------ 15 zimbra zimbra 4096 Dec 1 18:37 httpd-2.0.54
drwx------ 3 zimbra zimbra 4096 Dec 1 18:37 index
-rw------- 1 root root 6826 May 21 2007 .install_history
drwx------ 7 root root 4096 Dec 1 18:37 jdk1.5.0_08
drwx------ 3 root root 4096 Dec 1 18:33 .kde
drwx------ 6 root root 4096 Dec 1 18:38 lib
drwx------ 4 root root 4096 Dec 1 18:38 libexec
drwx------ 2 zimbra zimbra 20480 Dec 1 18:38 log
drwx------ 4 zimbra zimbra 4096 Dec 1 18:39 logger
drwx------ 9 zimbra zimbra 4096 Dec 1 18:39 mysql-standard-5.0.33-pc-linux-gnu-i686-glibc23
drwx------ 10 zimbra zimbra 4096 Dec 1 18:39 net-snmp-5.4
drwx------ 10 zimbra zimbra 4096 Dec 1 18:39 openldap-2.3.34
drwx------ 2 zimbra zimbra 4096 Dec 1 18:39 openldap-data
drwx------ 2 zimbra zimbra 4096 Dec 1 18:39 openldap-replica
drwx------ 9 zimbra zimbra 4096 Dec 1 18:39 perdition-1.17
drwx------ 7 root root 4096 Dec 1 18:39 postfix-2.2.9
drwx------ 4 root root 4096 Dec 1 18:39 redolog
drwxrwxrwx 2 root root 4096 Dec 1 18:33 .saveconfig
drwx------ 6 zimbra zimbra 4096 Dec 1 18:40 sleepycat-4.2.52.4
drwx------ 2 root root 4096 Dec 1 18:33 .ssh
drwx------ 3 zimbra zimbra 4096 Dec 1 18:40 ssl
drwx------ 4 root root 4096 Dec 1 18:40 store
drwxr-xr-x 3 root root 4096 Dec 2 15:36 tomcat
drwx------ 5 zimbra zimbra 4096 Dec 1 18:57 verity
drwx------ 3 zimbra zimbra 4096 Dec 1 18:57 wiki
drwx------ 6 zimbra zimbra 4096 Dec 1 18:57 zimbramon
drwx------ 2 zimbra zimbra 4096 Dec 1 18:57 zimlets
drwx------ 2 zimbra zimbra 4096 Dec 1 18:57 zimlets-extra
drwx------ 2 zimbra zimbra 4096 Dec 1 18:57 zimlets-network  |