I too have had the same problem issuing a CSR from the CLI that includes the SubjAltNames. My problem is that I'm using GoDaddy to sign the Cert and can't edit the CA.
Did anyone bug this in bugzilla? I'll vote for it!
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OS : Ubuntu 6.02 LTS
ZCS : zcs-NETWORK-6.0.8_GA_2661.UBUNTU6
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